JASPAR - RFX1 - BP001008.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX1
Model ID:	BP001008.1
Cell line/tissue:	HepG2
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0509.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48743
Source:	ENCSR928API
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6064

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	0.00	0.02	0.00	0.01	0.00	-0.00	0.04	0.09	-0.00	-0.00	0.00	0.00	-0.00	]
C [	0.00	0.00	0.01	0.00	-0.00	-0.00	0.01	0.00	0.05	0.07	-0.00	-0.00	0.00	-0.00	0.04	-0.00	-0.00	0.09	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	0.05	0.00	-0.00	0.02	0.00	-0.00	-0.00	-0.00	0.05	0.07	-0.00	0.00	-0.00	-0.00	0.01	0.01	0.00	0.00	]
T [	0.00	-0.00	0.00	0.00	0.00	0.05	0.02	-0.00	0.00	0.00	-0.00	0.04	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	1276	1370	1340	1354	1445	1364	1519	1366	1356	1503	1360	1267	1297	1242	1304	917	1010	982	421	880	1385	113	138	3945	408	1613	692	511	5039	5950	10	2049	1757	1398	1599	1617	1562	1560	1422	1493	1517	1420	1550	1403	1487	1437	1446	1461	1386	1374	]
C [	1698	1678	1712	1670	1600	1614	1577	1625	1717	1604	1641	1714	1737	1721	1798	2379	1500	498	696	1739	1055	4862	5340	940	314	48	34	4531	29	10	5987	1837	1097	1755	1627	1558	1711	1746	1661	1689	1704	1697	1652	1815	1659	1716	1690	1685	1789	1705	]
G [	1651	1674	1528	1708	1661	1589	1595	1643	1614	1599	1691	1559	1438	1524	1655	1322	1871	3970	561	569	2129	216	45	360	362	4386	5305	86	557	98	2	1296	2617	1764	1728	1683	1567	1566	1641	1595	1461	1549	1541	1529	1659	1630	1596	1622	1527	1611	]
T [	1439	1342	1484	1332	1358	1497	1373	1430	1377	1358	1372	1524	1592	1577	1307	1446	1683	614	4386	2876	1495	873	541	819	4980	17	33	936	439	6	65	882	593	1147	1110	1206	1224	1192	1340	1287	1382	1398	1321	1317	1259	1281	1332	1296	1362	1374	]

Hypothetical CWM

A [	-0.00	0.00	-0.01	-0.01	0.00	-0.03	0.01	0.01	-0.04	-0.06	0.04	0.01	0.05	0.03	-0.01	0.05	0.09	-0.03	0.00	0.02	0.01	0.01	]
C [	0.00	0.01	0.02	0.02	-0.03	-0.00	0.03	-0.00	0.06	0.07	-0.01	0.00	-0.03	-0.03	0.06	-0.07	-0.01	0.10	0.01	0.00	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.06	0.00	-0.04	0.04	-0.01	-0.03	0.01	-0.01	0.07	0.08	-0.03	0.04	-0.00	-0.05	0.03	0.03	0.01	0.01	]
T [	0.01	0.00	0.01	0.01	-0.01	0.06	0.04	-0.01	0.02	0.04	0.01	0.05	-0.07	-0.06	0.02	0.01	-0.04	0.00	-0.01	-0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 839

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 151

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 121

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 22

CWM

PFM

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001005.1	RFX1	ENCSR041AXL	K562	Homo sapiens	MA0509.3
BP001006.1	RFX1	ENCSR066TET	MCF-7	Homo sapiens	MA0509.3
BP001007.1	RFX1	ENCSR788XNX	MCF-7	Homo sapiens	MA0509.3
BP001009.1	RFX1	ENCSR968GIB	K562	Homo sapiens	MA0509.3