JASPAR - RFX1 - BP001007.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX1
Model ID:	BP001007.1
Cell line/tissue:	MCF-7
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0509.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48743
Source:	ENCSR788XNX
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 11945

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.08	0.00	0.00	0.00	-0.01	0.03	0.09	-0.00	0.00	0.00	0.00	0.00	]
C [	0.00	0.00	0.01	0.00	0.00	-0.00	0.00	-0.00	0.11	0.09	-0.00	-0.00	-0.00	-0.00	0.02	-0.00	-0.00	0.08	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.14	-0.00	-0.00	0.06	-0.00	-0.00	-0.00	-0.00	0.12	0.11	-0.00	0.01	-0.00	-0.00	0.01	0.01	0.00	0.00	]
T [	0.00	0.00	0.00	0.00	0.00	0.13	0.07	-0.00	0.01	0.02	0.00	0.06	-0.00	-0.00	0.01	0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	2877	2892	2729	2867	2632	2720	2803	2816	3055	3070	2631	2877	2558	2535	2646	2396	2341	1488	1801	208	20	799	1803	22	9	10250	1294	842	1268	3084	5751	9408	583	3328	3158	2639	3443	3562	3285	2751	2825	3027	3098	2755	3306	2853	2728	2984	2843	3165	]
C [	2761	2837	2751	2709	3032	2952	2729	2711	2829	2697	3209	2862	2909	3167	3163	2920	3189	4410	1864	1	142	824	302	10237	8765	468	507	59	275	4027	640	832	7777	3212	2199	2824	2722	2486	2795	3324	2976	2729	3004	3201	2900	2950	2962	2779	3211	2834	]
G [	3305	3367	3264	3283	3125	3227	3511	3084	3085	3036	3072	3018	3074	3207	2847	3239	3635	2294	3750	11722	53	48	8653	71	28	505	1275	10978	10270	1369	3679	958	789	3064	4623	3396	3227	3175	3197	2951	2877	3339	2923	2985	2854	2960	3389	3408	3129	3273	]
T [	3002	2849	3201	3086	3156	3046	2902	3334	2976	3142	3033	3188	3404	3036	3289	3390	2780	3753	4530	14	11730	10274	1187	1615	3143	722	8869	66	132	3465	1875	747	2796	2341	1965	3086	2553	2722	2668	2919	3267	2850	2920	3004	2885	3182	2866	2774	2762	2673	]

Hypothetical CWM

A [	-0.00	-0.00	-0.02	-0.01	0.02	-0.05	0.02	0.04	-0.08	-0.09	0.10	0.03	0.07	0.05	0.00	0.07	0.10	-0.04	0.01	0.01	0.01	0.01	]
C [	0.01	0.02	0.04	0.04	-0.05	-0.00	0.06	-0.02	0.13	0.13	-0.02	0.01	-0.04	-0.00	0.08	-0.05	0.01	0.12	0.03	0.01	0.01	0.02	]
G [	0.02	0.01	0.01	0.03	0.14	-0.01	-0.08	0.09	-0.02	-0.05	0.01	-0.00	0.13	0.12	-0.01	0.05	-0.00	-0.03	0.04	0.03	0.02	0.01	]
T [	0.01	0.01	0.02	0.01	-0.04	0.13	0.08	0.00	0.07	0.09	0.03	0.08	-0.08	-0.06	0.03	0.02	-0.03	0.02	-0.01	-0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1771

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001005.1	RFX1	ENCSR041AXL	K562	Homo sapiens	MA0509.3
BP001006.1	RFX1	ENCSR066TET	MCF-7	Homo sapiens	MA0509.3
BP001008.1	RFX1	ENCSR928API	HepG2	Homo sapiens	MA0509.3
BP001009.1	RFX1	ENCSR968GIB	K562	Homo sapiens	MA0509.3