Detailed information of deep learning profile BP001006.1

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This page shows detailed deep learning-derived predictions and motifs for RFX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP001006.1
Cell line/tissue: MCF-7
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR066TET
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 0.00 -0.00 0.02 0.05 -0.00 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 0.09 0.06 -0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.04 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.10 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 0.00 0.08 0.07 0.00 0.01 -0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.09 0.05 -0.00 0.00 0.01 0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3729 3778 3447 3717 3461 3396 3590 3543 4065 3998 3236 3613 3289 3241 3375 3080 2948 2218 2477 458 70 1153 2283 28 36 11760 2677 1469 1143 4155 6803 9507 1489 4082 3855 3364 4337 4456 4387 3639 3777 3837 3933 3496 4256 3673 3690 3754 3632 3952 ]
C [ 3571 3726 3695 3657 3866 3904 3616 3558 3605 3513 4244 3789 3748 4293 4287 3850 4214 5750 2475 10 270 1803 699 15155 10761 1172 891 133 753 4524 1525 1965 8345 4007 3047 3581 3602 3442 3594 4246 3689 3573 3890 4403 3887 3899 3720 3700 4145 3785 ]
G [ 4159 4333 4198 4277 4191 4356 4584 4092 4108 3977 3920 3864 3934 4054 3791 4230 4887 3000 4553 14969 91 139 10546 43 78 1022 2761 13611 13078 3069 4704 2168 1724 3984 5830 4347 4306 4038 4099 3846 3843 4476 3879 3887 3684 3746 4616 4603 3951 4275 ]
T [ 4012 3634 4131 3820 3953 3815 3681 4278 3693 3983 4071 4205 4500 3883 4018 4311 3422 4503 5966 34 15040 12376 1943 245 4596 1517 9142 258 497 3723 2439 1831 3913 3398 2739 4179 3226 3535 3391 3740 4162 3585 3769 3685 3644 4153 3445 3414 3743 3459 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 0.01 -0.04 0.00 0.02 -0.06 -0.08 0.06 0.02 0.04 0.03 -0.00 0.04 0.06 -0.02 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.02 0.02 -0.05 -0.00 0.04 -0.02 0.09 0.09 -0.01 0.00 -0.02 -0.00 0.06 -0.03 0.00 0.07 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.10 -0.02 -0.06 0.07 -0.02 -0.03 0.00 0.00 0.09 0.08 -0.00 0.03 -0.00 -0.03 0.02 0.02 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.01 -0.03 0.09 0.06 -0.00 0.04 0.06 0.02 0.04 -0.06 -0.05 0.01 0.00 -0.03 0.01 -0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3934

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 511

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 44

CWM

PFM

     

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001005.1 RFX1 ENCSR041AXL K562 Homo sapiens MA0509.3
BP001007.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens MA0509.3
BP001008.1 RFX1 ENCSR928API HepG2 Homo sapiens MA0509.3
BP001009.1 RFX1 ENCSR968GIB K562 Homo sapiens MA0509.3
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