Detailed information of deep learning profile BP001005.1

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This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP001005.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR041AXL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 -0.00 0.09 0.10 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.00 0.12 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.06 0.00 -0.00 0.02 0.00 -0.00 -0.00 -0.00 0.08 0.10 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 0.06 0.03 -0.00 0.00 0.00 0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3508 3885 3515 3546 4543 3574 3724 4259 3634 4671 3608 3463 3454 3235 4446 2589 3624 4156 1827 2348 3757 322 123 10363 1082 4326 1838 1948 12853 15542 21 5897 4691 3596 4528 4241 3832 4608 4514 3844 3858 3626 4552 3657 3674 3821 3666 4313 3584 4327 ]
C [ 4511 3896 4756 4899 3803 3790 3854 3961 4985 3861 3860 3974 4014 4234 4230 6258 3656 1164 1723 4728 2253 12897 14272 2406 763 63 64 10939 90 44 15333 4765 2895 4922 4268 3554 4269 3918 3909 3993 3941 4013 3978 4928 4553 4524 4276 4150 4340 4105 ]
G [ 3736 4363 3621 3679 3769 3640 4665 3787 3512 3757 4680 3570 3484 3570 3678 2924 4071 9351 1505 1118 5903 600 99 726 755 11357 13829 356 1543 147 13 2612 5714 4098 3901 4538 4362 3879 3791 4503 3490 3592 3599 3542 3916 3807 3627 3718 3583 3570 ]
T [ 4018 3629 3881 3649 3658 4769 3530 3766 3642 3484 3625 4766 4821 4734 3419 4002 4422 1102 10718 7579 3860 1954 1279 2278 13173 27 42 2530 1287 40 406 2499 2473 3157 3076 3440 3310 3368 3559 3433 4484 4542 3644 3646 3630 3621 4204 3592 4266 3771 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.00 0.02 -0.02 0.01 0.02 -0.06 -0.07 0.06 0.02 0.07 0.05 0.00 0.07 0.11 -0.05 0.00 0.02 0.00 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.04 -0.01 0.04 -0.01 0.10 0.11 -0.01 0.01 -0.04 -0.03 0.08 -0.08 -0.02 0.12 0.02 0.00 0.01 0.02 ]
G [ 0.02 0.01 0.00 0.02 0.09 0.00 -0.06 0.06 -0.01 -0.03 0.01 -0.02 0.11 0.12 -0.04 0.05 -0.00 -0.05 0.03 0.03 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.01 -0.03 0.08 0.06 0.00 0.04 0.05 0.02 0.08 -0.07 -0.07 0.03 0.01 -0.04 0.02 -0.01 -0.02 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 863

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 227

CWM

PFM

     

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001006.1 RFX1 ENCSR066TET MCF-7 Homo sapiens MA0509.3
BP001007.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens MA0509.3
BP001008.1 RFX1 ENCSR928API HepG2 Homo sapiens MA0509.3
BP001009.1 RFX1 ENCSR968GIB K562 Homo sapiens MA0509.3
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