Detailed information of deep learning profile BP000977.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000977.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR000BLF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.05 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.14 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.08 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.09 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.09 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5288 5256 5434 5284 5283 5242 5267 5099 5241 5306 5224 5372 5618 5506 5610 6543 6313 5273 4286 2422 2533 8435 13774 56 285 612 224 1818 6917 8347 1632 2737 3067 5070 5250 5180 4973 4976 5060 5252 5437 5515 5491 5493 5236 5251 5300 5271 5403 5308 ]
C [ 5531 5388 5474 5256 5386 5655 5476 5480 5301 5366 5370 5321 5343 5272 5447 5314 5972 5414 6403 2139 425 2392 5807 21442 2202 3252 801 419 4504 6812 17423 8300 7953 4493 4401 5308 5760 5982 5640 5473 5456 5304 5161 5260 5317 5417 5492 5709 5631 5467 ]
G [ 5135 5280 5089 5288 5247 5043 5258 5097 5395 5316 5014 5289 5353 5539 5715 5013 4866 4693 5311 1786 18198 9513 404 46 55 427 262 19077 6898 2166 589 959 4427 4779 6890 5982 5455 4921 4993 5083 5053 5181 5311 5264 5209 5252 5213 5170 5075 5312 ]
T [ 5673 5703 5630 5799 5711 5687 5626 5951 5690 5639 6019 5645 5313 5310 4855 4757 4476 6247 5627 15280 471 1287 1642 83 19085 17336 20340 313 3308 4302 1983 9631 6180 7285 5086 5157 5439 5748 5934 5819 5681 5627 5664 5610 5865 5707 5622 5477 5518 5540 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.03 0.01 0.04 0.07 -0.04 -0.04 -0.02 -0.05 0.01 0.03 0.04 -0.02 -0.03 -0.02 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 -0.04 -0.01 0.04 0.14 0.01 0.00 0.02 -0.03 0.01 0.03 0.10 0.04 0.03 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.02 0.11 0.05 -0.05 -0.03 -0.04 -0.05 -0.05 0.11 0.04 -0.01 -0.04 -0.01 0.02 0.01 0.02 0.02 ]
T [ -0.01 -0.01 0.00 0.01 0.05 -0.05 -0.02 -0.01 -0.04 0.08 0.09 0.10 -0.06 -0.01 -0.00 -0.01 0.02 0.00 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2010

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1751

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 626

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 617

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 457

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 368

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 26

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
Showing 4 profiles of page 1 from 1 pages
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