JASPAR - HNF4A - BP000978.1

This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	HNF4A
Model ID:	BP000978.1
Cell line/tissue:	HepG2
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0114.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P41235
Source:	ENCSR000EEU
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13292

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.01	-0.00	-0.00	-0.00	-0.00	0.07	0.05	0.05	-0.00	-0.00	-0.00	-0.00	0.03	0.00	-0.00	-0.00	]
C [	0.01	0.00	0.00	-0.00	-0.00	-0.00	0.01	0.07	-0.00	-0.00	-0.00	-0.00	-0.00	0.02	0.07	-0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	0.01	0.01	0.06	0.00	0.00	-0.00	0.00	-0.00	0.00	0.11	0.01	-0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.04	0.01	-0.00	-0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	3430	3250	3184	3243	3309	3262	3465	3194	3248	3221	3341	3388	3407	3289	3197	2887	3051	4104	3534	5468	1200	2530	1851	301	11931	10085	11116	46	855	696	322	9145	3361	3499	2567	2716	2786	2968	3084	3253	3454	3251	3243	3516	3203	3270	3272	3268	3364	3225	]
C [	3342	3417	3268	3349	3358	3433	3276	3455	3447	3401	3333	3268	3227	3185	3591	4042	4422	3184	2786	747	473	1618	4530	11655	376	332	60	25	395	6300	11316	1242	3272	3099	3088	3319	3678	3599	3555	3350	3310	3474	3449	3265	3395	3347	3375	3507	3273	3604	]
G [	3397	3585	3729	3675	3543	3526	3512	3546	3379	3505	3574	3531	3728	3781	3673	3418	2800	3010	5084	5370	10534	4374	2928	295	737	2432	1889	13180	3535	1518	300	1480	4253	3658	3930	3480	3597	3539	3527	3546	3583	3449	3582	3531	3650	3638	3595	3425	3499	3515	]
T [	3123	3040	3111	3025	3082	3071	3039	3097	3218	3165	3044	3105	2930	3037	2831	2945	3019	2994	1888	1707	1085	4770	3983	1041	248	443	227	41	8507	4778	1354	1425	2406	3036	3707	3777	3231	3186	3126	3143	2945	3118	3018	2980	3044	3037	3050	3092	3156	2948	]

Hypothetical CWM

A [	-0.01	-0.01	0.01	-0.00	0.01	-0.01	-0.00	-0.01	-0.04	0.07	0.06	0.06	-0.04	-0.02	-0.02	-0.05	0.04	0.01	-0.00	-0.01	-0.01	]
C [	0.02	0.02	0.01	0.01	-0.01	-0.03	-0.00	0.03	0.08	-0.04	-0.04	-0.03	-0.03	-0.04	0.04	0.08	-0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.00	0.02	0.03	0.07	0.02	0.01	-0.02	0.02	0.00	0.01	0.11	0.02	-0.01	-0.03	0.03	0.01	0.01	0.01	0.01	]
T [	-0.01	-0.00	-0.00	-0.01	-0.02	-0.01	0.03	0.01	0.01	-0.04	-0.01	-0.04	-0.03	0.06	0.03	0.00	-0.03	-0.01	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1279

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 726

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 378

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 321

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 313

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 266

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000977.1	HNF4A	ENCSR000BLF	HepG2	Homo sapiens	MA0114.5
BP000979.1	HNF4A	ENCSR445QRF	liver	Homo sapiens	MA0114.5
BP000980.1	HNF4A	ENCSR469FBY	HepG2	Homo sapiens	MA0114.5
BP000981.1	HNF4A	ENCSR601OGE	liver	Homo sapiens	MA0114.5