Detailed information of deep learning profile BP000981.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000981.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR601OGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.11 0.00 0.00 0.00 -0.00 0.00 0.02 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.06 0.05 0.07 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5942 5933 6074 5708 6054 6009 5836 5831 5835 6096 5986 6193 6246 6044 5957 7465 6912 6409 4807 2736 3260 9534 13699 441 403 673 273 2281 7208 7615 2326 3102 3818 5353 5616 5517 5487 5584 5429 6225 6551 6355 5946 5969 5658 5916 5918 6087 5855 6012 ]
C [ 5171 5368 5377 5162 5307 5370 5387 5609 5204 5331 5163 5136 5281 5032 5580 5395 6047 5053 6063 2099 503 2543 7642 21813 1846 2937 733 486 5006 9416 17006 7944 6885 3965 4113 4966 5750 5864 5845 5385 5006 4851 5051 5263 5273 5307 5239 5511 5672 5211 ]
G [ 5203 5273 5094 5130 5121 5075 5253 4901 5237 5036 5037 5136 5306 5521 5628 4648 4614 4317 5115 1904 18376 9145 185 187 46 533 434 19549 6784 1387 723 1164 4884 5629 7149 6438 5562 4820 4751 4711 5044 5246 5656 5195 5250 4866 5005 5083 4973 5170 ]
T [ 6395 6137 6166 6711 6229 6257 6235 6370 6435 6248 6525 6246 5878 6114 5546 5203 5138 6932 6726 15972 572 1489 1185 270 20416 18568 21271 395 3713 4293 2656 10501 7124 7764 5833 5790 5912 6443 6686 6390 6110 6259 6058 6284 6530 6622 6549 6030 6211 6318 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.02 0.01 0.03 0.06 -0.02 -0.03 -0.01 -0.04 0.01 0.02 0.02 -0.01 -0.02 -0.01 -0.00 -0.00 -0.00 -0.01 ]
C [ 0.02 0.02 0.01 0.01 0.03 -0.02 -0.00 0.04 0.11 0.03 0.01 0.02 -0.02 0.01 0.04 0.08 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.01 0.09 0.04 -0.04 -0.02 -0.03 -0.03 -0.02 0.09 0.04 -0.02 -0.02 0.00 0.02 0.02 0.03 0.02 0.02 ]
T [ -0.01 -0.01 -0.00 0.01 0.04 -0.04 -0.02 -0.02 -0.02 0.07 0.06 0.07 -0.04 -0.01 -0.00 -0.01 0.02 0.00 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2702

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1249

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 984

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 458

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 26

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
Showing 4 profiles of page 1 from 1 pages
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