Detailed information of deep learning profile BP000979.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000979.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR445QRF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 0.05 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.12 0.00 -0.00 0.00 -0.00 0.00 0.02 0.06 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.08 0.02 -0.00 0.00 -0.00 -0.00 -0.00 0.09 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.07 0.06 0.08 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5746 5855 5945 5682 5851 5944 5850 5640 5632 5998 5727 5949 6122 5970 5927 7112 6821 6359 4688 2645 3280 9282 13373 98 475 614 284 2409 7144 7636 2404 3033 3688 5319 5507 5472 5337 5290 5425 5970 6265 6254 5961 5717 5561 5877 5771 5918 5783 5818 ]
C [ 5210 5291 5278 5043 5243 5291 5256 5516 5143 5258 4967 5176 5284 5140 5525 5399 5820 5045 5880 2281 506 2496 7640 22026 2280 2854 796 501 4934 9301 16675 8026 7123 4118 4133 4922 5709 5917 5754 5417 5147 4767 4946 5275 5279 5240 5125 5372 5555 5295 ]
G [ 5280 5146 5020 5156 5062 5017 5127 4901 5200 4976 5085 5094 5336 5351 5488 4675 4487 4303 5137 2010 17797 9263 248 45 84 509 446 18949 6786 1417 725 1130 4593 5455 7052 6401 5514 4716 4592 4749 4940 5278 5535 5242 5128 4851 4968 4961 5040 5104 ]
T [ 6098 6042 6091 6453 6178 6082 6101 6277 6359 6102 6555 6115 5592 5873 5394 5148 5206 6627 6629 15398 751 1293 1073 165 19495 18357 20808 475 3470 3980 2530 10145 6930 7442 5642 5539 5774 6411 6563 6198 5982 6035 5892 6100 6366 6366 6470 6083 5956 6117 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 -0.00 -0.03 0.01 0.04 0.07 -0.02 -0.03 -0.01 -0.04 0.02 0.03 0.03 -0.00 -0.02 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.02 0.01 0.01 0.03 -0.02 0.00 0.05 0.12 0.02 0.01 0.03 -0.01 0.01 0.05 0.09 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.01 0.09 0.05 -0.05 -0.02 -0.03 -0.03 -0.03 0.10 0.04 -0.02 -0.03 -0.00 0.02 0.02 0.03 0.02 0.02 ]
T [ -0.01 -0.00 0.00 0.01 0.04 -0.05 -0.02 -0.03 -0.03 0.07 0.08 0.08 -0.04 -0.01 -0.00 -0.01 0.02 0.01 0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6014

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2452

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1870

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 935

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 612

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 547

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 517

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 119

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
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