Detailed information of deep learning profile BP000980.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000980.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR469FBY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.07 0.06 0.06 -0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 0.06 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5373 5284 5319 5591 5770 5553 5334 5530 5366 5482 5744 5916 5582 5167 5080 5117 7167 6387 9251 1827 4171 3095 282 19419 16657 18362 101 1656 1189 433 14711 5683 6111 4282 4470 4775 5265 5184 5649 5748 5480 5677 5767 5576 5416 5536 5607 5570 5678 5592 ]
C [ 4846 4810 4733 4994 4786 4959 5145 5177 4879 4721 4637 4621 4770 5170 5704 6460 4524 3892 845 610 2125 6591 18173 266 502 42 46 366 8733 17433 1789 4966 4357 4612 4730 5581 4993 5145 4923 4745 4996 4928 4659 4898 4798 4880 5051 4844 4889 4724 ]
G [ 5130 5339 5264 5011 4970 5190 4911 4863 4909 5087 5252 5370 5437 5330 4934 4171 4163 7359 7925 16735 6142 4241 400 813 2889 1998 20491 5746 2213 393 1911 5824 5072 5678 4963 5075 4881 5113 4882 4974 5010 4988 5413 5170 5387 5086 4890 5069 5027 5229 ]
T [ 5338 5254 5371 5091 5161 4985 5297 5117 5533 5397 5054 4780 4898 5020 4969 4939 4833 3049 2666 1515 8249 6760 1832 189 639 285 49 12919 8552 2428 2276 4214 5147 6115 6524 5256 5548 5245 5233 5220 5201 5094 4848 5043 5086 5185 5139 5204 5093 5142 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 0.02 -0.01 0.00 -0.01 -0.04 0.07 0.07 0.06 -0.02 -0.01 -0.02 -0.04 0.04 0.01 0.00 -0.01 -0.01 ]
C [ 0.01 0.02 0.01 0.01 -0.01 -0.03 -0.01 0.03 0.08 -0.02 -0.04 -0.02 -0.02 -0.03 0.04 0.08 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.02 0.03 0.07 0.02 0.01 -0.01 0.03 0.01 0.02 0.11 0.03 -0.00 -0.02 0.02 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.02 -0.01 0.03 0.02 0.02 -0.03 -0.01 -0.03 -0.03 0.06 0.04 0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3661

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2993

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2074

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 909

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 790

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 27

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000977.1 HNF4A ENCSR000BLF HepG2 Homo sapiens MA0114.5
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
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