Detailed information of deep learning profile BP000977.1

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This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000977.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0114.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR000BLF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.09 0.07 0.07 -0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.09 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.08 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.14 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5540 5518 5477 5622 5707 5865 5610 5664 5627 5681 5819 5934 5748 5439 5157 5086 7285 6180 9631 1983 4302 3308 313 20340 17336 19085 83 1642 1287 471 15280 5627 6247 4476 4757 4855 5310 5313 5645 6019 5639 5690 5951 5626 5687 5711 5799 5630 5703 5673 ]
C [ 5312 5075 5170 5213 5252 5209 5264 5311 5181 5053 5083 4993 4921 5455 5982 6890 4779 4427 959 589 2166 6898 19077 262 427 55 46 404 9513 18198 1786 5311 4693 4866 5013 5715 5539 5353 5289 5014 5316 5395 5097 5258 5043 5247 5288 5089 5280 5135 ]
G [ 5467 5631 5709 5492 5417 5317 5260 5161 5304 5456 5473 5640 5982 5760 5308 4401 4493 7953 8300 17423 6812 4504 419 801 3252 2202 21442 5807 2392 425 2139 6403 5414 5972 5314 5447 5272 5343 5321 5370 5366 5301 5480 5476 5655 5386 5256 5474 5388 5531 ]
T [ 5308 5403 5271 5300 5251 5236 5493 5491 5515 5437 5252 5060 4976 4973 5180 5250 5070 3067 2737 1632 8347 6917 1818 224 612 285 56 13774 8435 2533 2422 4286 5273 6313 6543 5610 5506 5618 5372 5224 5306 5241 5099 5267 5242 5283 5284 5434 5256 5288 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.00 0.02 -0.01 -0.00 -0.01 -0.06 0.10 0.09 0.08 -0.04 -0.01 -0.02 -0.05 0.05 0.01 0.00 -0.01 -0.01 ]
C [ 0.02 0.02 0.01 0.02 -0.01 -0.04 -0.01 0.04 0.11 -0.05 -0.05 -0.04 -0.03 -0.05 0.05 0.11 -0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.03 0.04 0.10 0.03 0.01 -0.03 0.02 0.00 0.01 0.14 0.04 -0.01 -0.04 0.03 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.03 -0.02 0.04 0.03 0.01 -0.05 -0.02 -0.04 -0.04 0.07 0.04 0.01 -0.03 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2010

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1751

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 626

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 617

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 457

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 368

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 26

CWM

PFM

     

HCWM

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000978.1 HNF4A ENCSR000EEU HepG2 Homo sapiens MA0114.5
BP000979.1 HNF4A ENCSR445QRF liver Homo sapiens MA0114.5
BP000980.1 HNF4A ENCSR469FBY HepG2 Homo sapiens MA0114.5
BP000981.1 HNF4A ENCSR601OGE liver Homo sapiens MA0114.5
Showing 4 profiles of page 1 from 1 pages
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