Detailed information of deep learning profile BP000965.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000965.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR736BUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.03 -0.00 0.05 0.01 0.04 0.05 0.05 0.00 0.04 0.02 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 521 489 464 499 477 476 496 493 450 472 474 474 500 654 567 398 188 379 3 6 119 3 0 364 58 108 742 623 526 462 506 468 467 492 480 505 491 465 509 533 539 465 504 493 490 496 527 492 483 503 ]
C [ 700 721 737 760 735 765 703 703 725 699 787 708 714 625 718 452 154 1843 5 5 3 0 8 1710 9 77 487 393 768 758 613 641 644 621 659 717 651 673 734 733 679 755 721 728 734 734 730 735 707 689 ]
G [ 924 916 958 882 889 884 934 955 962 1008 949 986 1045 911 1003 740 2258 40 2614 1336 2498 2621 2617 8 2529 2074 1087 1184 1026 905 1034 1084 1115 1096 1075 966 1006 1037 960 878 966 906 924 908 910 912 855 882 936 920 ]
T [ 480 499 466 484 524 500 492 474 488 446 415 457 366 435 337 1035 25 363 3 1278 5 1 0 543 29 366 309 425 305 500 472 432 399 416 411 437 477 450 422 481 441 499 476 496 491 483 513 516 499 513 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.01 -0.02 0.01 -0.02 -0.02 0.00 -0.01 -0.01 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.00 0.00 0.00 0.00 0.04 -0.01 -0.01 -0.02 -0.01 -0.01 0.04 -0.01 -0.01 0.00 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.01 -0.00 0.03 -0.02 0.05 0.02 0.04 0.05 0.05 -0.02 0.04 0.02 0.01 0.00 0.01 0.01 ]
T [ -0.00 0.00 -0.00 0.01 -0.02 -0.00 -0.03 0.03 -0.02 -0.02 -0.02 0.01 -0.01 0.01 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1012

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 656

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 483

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 47

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages