Detailed information of deep learning profile BP000965.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000965.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR736BUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.04 0.00 0.05 0.05 0.04 0.01 0.05 -0.00 0.03 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 513 499 516 513 483 491 496 476 499 441 481 422 450 477 437 411 416 399 432 472 500 305 425 309 366 29 543 0 1 5 1278 3 363 25 1035 337 435 366 457 415 446 488 474 492 500 524 484 466 499 480 ]
C [ 920 936 882 855 912 910 908 924 906 966 878 960 1037 1006 966 1075 1096 1115 1084 1034 905 1026 1184 1087 2074 2529 8 2617 2621 2498 1336 2614 40 2258 740 1003 911 1045 986 949 1008 962 955 934 884 889 882 958 916 924 ]
G [ 689 707 735 730 734 734 728 721 755 679 733 734 673 651 717 659 621 644 641 613 758 768 393 487 77 9 1710 8 0 3 5 5 1843 154 452 718 625 714 708 787 699 725 703 703 765 735 760 737 721 700 ]
T [ 503 483 492 527 496 490 493 504 465 539 533 509 465 491 505 480 492 467 468 506 462 526 623 742 108 58 364 0 3 119 6 3 379 188 398 567 654 500 474 474 472 450 493 496 476 477 499 464 489 521 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 -0.01 0.01 -0.02 -0.02 -0.02 0.03 -0.03 -0.00 -0.02 0.01 -0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.02 0.04 -0.02 0.05 0.05 0.04 0.02 0.05 -0.02 0.03 -0.00 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.00 -0.01 -0.01 0.04 -0.01 -0.01 -0.02 -0.01 -0.01 0.04 0.00 0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.01 0.01 -0.01 -0.01 0.00 -0.02 -0.02 0.01 -0.02 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1012

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 656

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 483

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 47

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages