Detailed information of deep learning profile BP000964.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000964.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR290ZOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.02 0.05 -0.00 0.07 0.05 0.05 0.01 0.07 -0.00 0.03 -0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 494 498 510 502 515 472 474 442 477 444 465 418 475 441 451 407 416 368 443 494 491 364 431 325 408 26 587 0 2 2 1288 0 341 32 1012 364 434 362 391 399 424 474 466 467 493 451 447 468 477 449 ]
C [ 868 911 877 837 879 850 857 872 880 906 835 953 953 950 882 1000 1040 1077 1042 990 846 1000 1118 1007 1960 2445 4 2537 2532 2448 1240 2532 63 2200 720 990 868 982 991 889 945 896 889 919 826 870 846 880 867 908 ]
G [ 681 648 662 694 682 698 694 677 697 675 689 688 667 649 703 664 576 610 589 583 725 679 392 479 58 4 1617 1 0 0 6 5 1727 118 425 631 565 652 677 712 673 682 688 663 702 712 750 709 737 687 ]
T [ 495 481 489 505 462 518 513 547 484 513 549 479 443 498 502 467 506 483 464 471 476 495 597 727 112 63 330 0 4 88 4 1 407 188 381 553 671 542 479 538 496 486 495 489 517 505 495 481 457 494 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.01 -0.02 0.01 -0.03 -0.03 -0.04 0.03 -0.03 -0.00 -0.03 0.02 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 0.00 0.02 0.05 -0.03 0.07 0.05 0.05 0.02 0.07 -0.03 0.03 -0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.02 -0.03 0.04 -0.03 -0.01 -0.04 -0.01 -0.03 0.05 -0.01 0.01 0.00 0.00 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.00 -0.00 -0.01 -0.02 -0.03 0.01 -0.05 -0.03 -0.00 0.01 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages