Detailed information of deep learning profile BP000960.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000960.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 0.00 0.07 0.00 0.04 0.05 0.07 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1484 1378 1454 1378 1412 1488 1459 1411 1434 1435 1432 1338 1356 1375 1356 1328 1436 1297 1315 1762 1580 1126 804 1089 8 47 642 43 7 937 295 449 1996 1593 1380 1348 1446 1398 1397 1433 1307 1375 1395 1392 1425 1465 1346 1340 1438 1450 ]
C [ 2152 2119 2146 2127 2157 2092 2028 2146 2164 2126 2018 2103 2043 1979 2040 1961 2151 2103 2145 1853 1979 1560 877 4530 17 132 33 27 17 4745 110 384 1534 1257 2082 2130 1803 1841 1958 1883 2018 2056 1972 1965 2086 2053 2036 2085 2061 2002 ]
G [ 2550 2488 2568 2515 2571 2438 2666 2540 2566 2536 2582 2551 2698 2744 2723 2890 2754 2944 2929 2548 2843 2195 5533 419 7416 3058 6736 7364 7420 24 6865 5305 2858 3264 2925 2510 2960 2947 2937 2855 2933 2635 2766 2690 2707 2629 2747 2611 2624 2628 ]
T [ 1261 1462 1279 1427 1307 1429 1294 1350 1283 1350 1415 1455 1350 1349 1328 1268 1106 1103 1058 1284 1045 2566 233 1409 6 4210 36 13 3 1741 177 1309 1059 1333 1060 1459 1238 1261 1155 1276 1189 1381 1314 1400 1229 1300 1318 1411 1324 1367 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.00 -0.01 -0.02 -0.04 0.01 -0.03 -0.03 -0.01 -0.01 -0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 -0.00 0.04 -0.02 -0.00 -0.02 -0.00 -0.02 0.04 -0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.03 -0.02 0.07 0.02 0.04 0.05 0.07 -0.03 0.05 0.02 0.01 0.01 0.01 ]
T [ -0.01 -0.00 -0.00 0.01 -0.03 -0.00 -0.04 0.02 -0.04 -0.03 -0.03 0.01 -0.02 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 28

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages