Detailed information of deep learning profile BP000956.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000956.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BNE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.04 0.00 0.10 0.01 0.07 0.09 0.11 0.00 0.06 0.02 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5172 5320 3974 3917 4012 3969 5216 4018 3939 5143 4182 3919 3836 3838 3810 3904 3827 5277 3608 3790 4979 4342 3301 3698 3561 67 161 1020 87 6 3578 826 1098 5918 3883 3859 4854 3610 3575 3938 3982 4631 3582 3939 4195 3808 4675 4177 3845 4939 ]
C [ 4499 4472 4529 5737 5595 5598 4348 4283 5612 4434 5571 4293 4407 4329 4342 4241 4375 4192 4371 4225 4874 4857 2946 2260 7974 24 218 43 29 16 9146 322 960 3406 2736 5272 4275 5346 4381 4355 3914 4159 4362 4670 4534 5245 4206 4346 4448 4391 ]
G [ 5637 5694 5487 5548 5661 5714 5531 7293 5904 5957 5498 6173 5782 6077 7124 7542 7547 6460 7843 8362 5831 6437 6038 12242 2801 19049 7822 18017 19018 19125 216 17363 13390 7016 7289 6999 6230 6733 7193 6698 7797 7029 6945 7103 5940 6469 6541 7104 7160 5868 ]
T [ 3852 3674 5170 3958 3892 3879 4065 3566 3705 3626 3909 4775 5135 4916 3884 3473 3411 3231 3338 2783 3476 3524 6875 960 4824 20 10959 80 26 13 6220 649 3712 2820 5252 3030 3801 3471 4011 4169 3467 3341 4271 3448 4491 3638 3738 3533 3707 3962 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 -0.01 -0.00 -0.01 -0.02 -0.06 0.01 -0.05 -0.04 -0.01 -0.01 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 -0.00 0.05 -0.03 -0.01 -0.03 -0.00 -0.03 0.05 -0.01 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 0.05 -0.00 0.10 0.05 0.08 0.09 0.11 -0.02 0.07 0.03 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 -0.03 -0.00 -0.05 0.04 -0.04 -0.03 -0.04 0.01 -0.02 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1947

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1870

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 39

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages