Detailed information of deep learning profile BP000954.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000954.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BJA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.04 0.04 0.03 0.01 0.05 -0.00 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 543 532 562 513 502 477 494 515 544 460 441 433 474 463 486 420 436 403 415 12 490 4 0 6 1221 1 346 40 1166 423 470 378 414 396 503 521 517 567 528 586 569 519 564 526 582 502 549 566 577 539 ]
C [ 1245 1248 1293 1284 1265 1307 1363 1356 1288 1392 1505 1457 1428 1445 1251 1319 1725 1463 2723 3344 7 3368 3363 3227 2159 3381 66 2929 1099 1450 1331 1471 1498 1481 1406 1261 1322 1256 1249 1244 1218 1214 1244 1298 1168 1231 1215 1216 1228 1210 ]
G [ 1014 986 986 979 1027 988 965 937 1002 995 837 941 882 905 1085 1010 534 693 110 6 2600 8 1 0 2 0 2594 194 663 811 818 914 944 943 891 1020 975 969 1047 972 1015 1060 1006 920 1042 1052 1023 1032 990 1022 ]
T [ 580 616 541 606 588 610 560 574 548 535 599 551 598 569 560 633 687 823 134 20 285 2 18 149 0 0 376 219 454 698 763 619 526 562 582 580 568 590 558 580 580 589 568 638 590 597 595 568 587 611 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.01 -0.00 -0.02 -0.02 -0.02 0.02 -0.03 -0.01 -0.02 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.01 0.04 -0.02 0.04 0.04 0.03 0.02 0.05 -0.01 0.02 -0.00 0.01 0.00 0.01 ]
G [ 0.00 0.00 -0.00 -0.01 -0.01 0.03 -0.01 0.00 -0.02 -0.01 -0.01 0.03 -0.00 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 0.01 -0.00 -0.01 -0.01 -0.02 -0.01 0.01 -0.03 -0.02 -0.00 0.00 -0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 610

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 331

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages