JASPAR - ZNF143 - BP000939.1

This page shows detailed deep learning-derived predictions and motifs for ZNF143 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZNF143
Model ID:	BP000939.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA0088.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P52747
Source:	ENCSR000DZL
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 916

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.02	-0.00	0.00	0.01	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	0.03	0.04	0.04	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.03	0.00	0.00	0.01	-0.00	0.01	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.01	-0.00	-0.00	0.00	-0.00	0.02	0.00	0.01	0.00	0.00	0.00	0.00	]
T [	-0.00	0.00	0.00	0.01	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	202	205	204	187	182	204	212	208	223	189	149	192	207	284	166	88	189	25	1	1	737	53	350	649	88	46	25	226	79	99	90	64	140	158	121	190	197	170	199	178	191	201	178	195	188	205	212	199	177	202	]
C [	266	271	278	296	280	265	293	296	279	341	310	349	338	283	235	273	72	880	914	907	3	115	340	80	52	310	880	396	454	329	47	501	62	326	391	284	274	302	271	280	287	261	281	276	286	282	282	270	287	287	]
G [	258	276	253	239	259	260	242	234	221	225	227	209	197	172	195	127	56	5	1	2	172	539	203	144	288	413	5	16	111	40	670	269	536	275	214	217	255	274	251	273	258	238	260	264	248	235	223	245	253	242	]
T [	190	164	181	194	195	187	169	178	193	161	230	166	174	177	320	428	599	6	0	6	4	209	23	43	488	147	6	278	272	448	109	82	178	157	190	225	190	170	195	185	180	216	197	181	194	194	199	202	199	185	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	-0.00	-0.01	0.01	0.00	-0.02	-0.02	0.02	-0.01	0.01	0.02	-0.00	-0.00	-0.01	0.00	-0.00	-0.01	-0.00	-0.01	-0.01	-0.00	-0.01	-0.00	-0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	0.01	0.00	0.03	0.04	0.04	-0.01	0.01	0.01	-0.00	0.00	0.01	0.03	0.01	0.01	0.02	-0.00	0.02	-0.01	0.01	0.01	0.01	0.01	0.00	0.00	]
G [	0.01	0.01	0.01	0.00	0.00	0.00	-0.01	0.00	-0.00	0.03	0.01	0.01	0.02	0.01	0.02	0.00	0.00	0.00	-0.01	0.02	0.01	0.03	0.01	0.01	0.01	0.01	0.01	0.01	]
T [	-0.00	-0.00	-0.00	0.00	0.01	0.01	-0.01	-0.02	-0.01	-0.02	0.01	-0.01	-0.01	0.01	-0.00	-0.01	0.00	0.01	0.01	-0.00	-0.01	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20650

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 686

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 492

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 388

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 367

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 128

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 115

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

HCWM

7 profiles found for the same TF (ZNF143) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000940.1	ZNF143	ENCSR000EBW	H1	Homo sapiens	MA0088.2
BP000941.1	ZNF143	ENCSR000ECO	HeLa-S3	Homo sapiens	MA0088.2
BP000942.1	ZNF143	ENCSR000EGP	K562	Homo sapiens	MA0088.2
BP000943.1	ZNF143	ENCSR063FUV	WTC11	Homo sapiens	MA0088.2
BP000944.1	ZNF143	ENCSR080UEM	HepG2	Homo sapiens	MA0088.2
BP000945.1	ZNF143	ENCSR427WZJ	K562	Homo sapiens	MA0088.2
BP000946.1	ZNF143	ENCSR936XTK	GM12878	Homo sapiens	MA0088.2