JASPAR - ZNF143 - BP000946.1

This page shows detailed deep learning-derived predictions and motifs for ZNF143 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZNF143
Model ID:	BP000946.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA0088.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P52747
Source:	ENCSR936XTK
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4087

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.03	0.01	0.01	-0.00	0.00	-0.00	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.03	0.00	0.03	-0.00	0.00	-0.00	-0.00	0.01	0.00	0.00	0.00	0.02	0.01	0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.01	0.00	0.00	]
G [	0.00	0.01	0.00	-0.00	0.03	-0.00	0.01	0.01	0.01	0.05	0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.10	0.10	0.07	-0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.05	0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.02	0.01	-0.00	0.04	-0.00	-0.00	0.00	0.00	-0.00	0.01	0.02	-0.00	0.03	-0.00	-0.00	0.04	0.01	0.00	0.00	-0.00	]

Frequency matrix

A [	764	720	834	729	726	929	734	891	660	642	592	989	828	427	544	258	407	1810	1340	1034	118	477	2249	220	152	676	50	31	15	98	3249	2012	1596	387	445	423	2448	406	345	357	399	778	696	888	727	629	641	732	701	799	]
C [	1075	1137	1164	1415	1544	1222	1418	1287	1488	1534	1340	1174	985	1684	2400	884	3108	284	552	197	81	1906	1254	836	765	2632	893	9	14	18	166	510	741	647	521	645	530	522	537	1626	1644	1217	1225	1124	1179	1261	1286	1151	1103	1132	]
G [	1249	1494	1465	1253	1144	1235	1242	1253	1276	1243	1159	1218	1835	1371	309	2699	258	1623	1903	2053	3781	1487	255	554	1719	462	20	4036	4052	3903	251	1222	735	698	2772	888	826	2771	705	788	744	1033	1189	1351	1284	1274	1277	1334	1432	1437	]
T [	999	736	624	690	673	701	693	656	663	668	996	706	439	605	834	246	314	370	292	803	107	217	329	2477	1451	317	3124	11	6	68	421	343	1015	2355	349	2131	283	388	2500	1316	1300	1059	977	724	897	923	883	870	851	719	]

Hypothetical CWM

A [	-0.01	-0.00	-0.00	-0.01	-0.01	-0.01	0.00	0.01	0.01	0.01	-0.02	0.00	0.02	-0.01	-0.01	0.02	-0.04	-0.03	-0.03	-0.00	0.04	0.02	0.02	-0.01	-0.00	-0.00	0.04	-0.02	-0.03	-0.01	-0.01	-0.01	-0.01	]
C [	0.01	0.01	0.01	0.01	0.04	0.00	0.04	-0.01	0.01	-0.00	-0.00	0.03	0.02	0.03	0.01	0.03	0.07	-0.01	-0.01	-0.05	-0.01	0.00	-0.00	0.02	-0.00	-0.00	0.00	-0.01	-0.01	0.01	0.02	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.01	0.04	-0.01	0.03	0.02	0.02	0.06	0.01	0.00	-0.01	0.02	0.00	-0.04	0.10	0.10	0.07	-0.00	0.02	0.01	0.00	0.05	0.00	0.00	0.05	0.01	0.00	0.00	0.01	0.01	]
T [	-0.00	-0.00	-0.01	-0.01	-0.01	-0.02	-0.01	-0.01	-0.01	0.01	-0.00	-0.01	0.00	0.04	0.03	-0.00	0.05	-0.04	-0.04	0.01	0.02	0.00	0.02	0.03	-0.01	0.03	-0.02	-0.01	0.04	0.01	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11631

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 809

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 494

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 487

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 347

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 160

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 120

CWM

PFM

HCWM

7 profiles found for the same TF (ZNF143) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000939.1	ZNF143	ENCSR000DZL	GM12878	Homo sapiens	MA0088.2
BP000940.1	ZNF143	ENCSR000EBW	H1	Homo sapiens	MA0088.2
BP000941.1	ZNF143	ENCSR000ECO	HeLa-S3	Homo sapiens	MA0088.2
BP000942.1	ZNF143	ENCSR000EGP	K562	Homo sapiens	MA0088.2
BP000943.1	ZNF143	ENCSR063FUV	WTC11	Homo sapiens	MA0088.2
BP000944.1	ZNF143	ENCSR080UEM	HepG2	Homo sapiens	MA0088.2
BP000945.1	ZNF143	ENCSR427WZJ	K562	Homo sapiens	MA0088.2