JASPAR - ZNF143 - BP000939.1

This page shows detailed deep learning-derived predictions and motifs for ZNF143 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZNF143
Model ID:	BP000939.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA0088.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P52747
Source:	ENCSR000DZL
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 916

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	0.01	0.00	0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.01	0.00	0.02	-0.00	0.00	-0.00	-0.00	0.01	0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.01	-0.00	0.01	0.00	0.00	0.03	0.00	-0.00	-0.00	0.00	0.00	-0.00	0.04	0.04	0.03	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.01	0.00	-0.00	0.02	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	185	199	202	199	194	194	181	197	216	180	185	195	170	190	225	190	157	178	82	109	448	272	278	6	147	488	43	23	209	4	6	0	6	599	428	320	177	174	166	230	161	193	178	169	187	195	194	181	164	190	]
C [	242	253	245	223	235	248	264	260	238	258	273	251	274	255	217	214	275	536	269	670	40	111	16	5	413	288	144	203	539	172	2	1	5	56	127	195	172	197	209	227	225	221	234	242	260	259	239	253	276	258	]
G [	287	287	270	282	282	286	276	281	261	287	280	271	302	274	284	391	326	62	501	47	329	454	396	880	310	52	80	340	115	3	907	914	880	72	273	235	283	338	349	310	341	279	296	293	265	280	296	278	271	266	]
T [	202	177	199	212	205	188	195	178	201	191	178	199	170	197	190	121	158	140	64	90	99	79	226	25	46	88	649	350	53	737	1	1	25	189	88	166	284	207	192	149	189	223	208	212	204	182	187	204	205	202	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.01	-0.00	0.01	0.01	0.00	-0.01	-0.00	0.01	-0.01	-0.01	0.01	-0.02	-0.01	-0.02	-0.01	0.01	0.01	0.00	-0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	0.01	0.01	0.03	0.01	0.02	-0.01	0.00	0.00	0.00	0.02	0.01	0.02	0.01	0.01	0.03	-0.00	0.00	-0.01	0.00	0.00	0.00	0.01	0.01	0.01	]
G [	0.00	0.00	0.01	0.01	0.01	0.01	-0.01	0.02	-0.00	0.02	0.01	0.01	0.03	0.01	0.00	-0.00	0.01	0.01	-0.01	0.04	0.04	0.03	0.00	0.01	0.01	0.01	0.01	0.01	]
T [	-0.00	-0.00	-0.00	-0.00	-0.01	-0.00	-0.01	-0.01	-0.00	-0.01	-0.00	0.00	-0.01	-0.00	-0.00	0.02	0.01	-0.01	0.02	-0.02	-0.02	0.00	0.01	-0.01	-0.00	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20650

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 686

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 492

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 388

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 367

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 128

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 115

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

HCWM

7 profiles found for the same TF (ZNF143) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000940.1	ZNF143	ENCSR000EBW	H1	Homo sapiens	MA0088.2
BP000941.1	ZNF143	ENCSR000ECO	HeLa-S3	Homo sapiens	MA0088.2
BP000942.1	ZNF143	ENCSR000EGP	K562	Homo sapiens	MA0088.2
BP000943.1	ZNF143	ENCSR063FUV	WTC11	Homo sapiens	MA0088.2
BP000944.1	ZNF143	ENCSR080UEM	HepG2	Homo sapiens	MA0088.2
BP000945.1	ZNF143	ENCSR427WZJ	K562	Homo sapiens	MA0088.2
BP000946.1	ZNF143	ENCSR936XTK	GM12878	Homo sapiens	MA0088.2