Detailed information of deep learning profile BP000917.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000917.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EGO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.02 0.00 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.01 0.00 0.00 0.02 -0.00 0.00 0.02 0.00 -0.00 -0.00 0.00 -0.00 0.07 0.01 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.01 -0.00 -0.00 0.07 -0.00 0.00 0.04 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.01 0.01 -0.00 0.07 0.04 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 220 260 282 282 257 220 267 208 227 238 256 247 230 262 254 262 125 171 543 99 84 277 38 17 50 215 7 14 678 134 56 126 532 340 528 279 300 244 210 287 260 258 246 273 253 254 264 231 225 243 ]
C [ 265 274 269 258 241 259 268 259 291 282 242 300 224 186 327 223 160 571 155 270 570 103 8 31 136 23 958 360 51 64 52 384 177 100 176 241 215 267 261 219 243 233 270 288 274 258 244 291 250 251 ]
G [ 298 276 279 278 294 310 258 291 302 282 293 237 276 374 234 413 187 153 176 349 111 170 960 4 11 671 7 58 252 624 867 339 239 497 186 205 237 255 285 308 291 264 295 230 266 269 247 275 309 289 ]
T [ 243 216 196 208 234 237 233 268 206 224 235 242 296 204 211 128 554 131 152 308 261 476 20 974 829 117 54 594 45 204 51 177 78 89 136 301 274 260 270 212 232 271 215 235 233 245 271 229 242 243 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.00 -0.01 0.00 0.01 0.01 -0.01 0.00 0.04 -0.02 -0.01 0.00 0.01 -0.01 -0.01 0.03 -0.02 -0.04 0.04 0.00 -0.01 -0.01 0.03 0.01 0.02 0.01 0.01 0.01 -0.01 0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.00 0.03 0.00 0.01 0.03 0.00 0.02 0.04 0.01 -0.03 -0.00 0.04 -0.04 0.08 0.03 -0.01 -0.01 0.01 0.03 0.02 -0.01 0.01 0.00 0.01 0.02 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.04 -0.00 0.00 0.02 0.02 -0.01 0.01 0.07 -0.03 -0.03 0.06 -0.03 0.02 0.02 0.04 0.05 0.01 0.02 0.04 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 -0.02 0.04 -0.00 -0.01 0.01 0.02 0.02 -0.02 0.07 0.05 -0.01 0.00 0.03 -0.02 -0.01 -0.01 0.01 -0.03 -0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 517

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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