JASPAR - RFX5 - BP000918.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX5 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX5
Model ID:	BP000918.1
Cell line/tissue:	SK-N-SH
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0510.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48382
Source:	ENCSR000EHY
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 2098

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.02	-0.00	-0.00	0.04	0.06	-0.00	0.01	0.00	-0.00	-0.00	0.00	0.00	]
C [	0.00	-0.00	0.00	0.00	0.01	0.00	0.01	0.05	0.02	0.00	0.00	0.00	0.03	-0.00	-0.00	0.06	0.00	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.01	0.00	0.00	0.00	0.01	0.00	0.00	-0.00	0.02	0.05	-0.00	0.00	0.00	-0.00	0.00	0.02	0.00	0.00	0.01	0.00	]
T [	0.00	0.00	0.00	0.01	0.01	0.01	-0.00	0.00	-0.00	0.03	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	465	521	474	452	480	499	480	498	425	441	434	392	444	462	552	458	200	114	227	204	10	652	48	1060	72	232	1898	2069	2	1020	501	494	460	532	571	394	408	469	558	481	419	508	487	492	514	499	480	487	462	468	]
C [	548	561	632	624	590	599	619	580	595	608	628	700	680	678	538	380	363	919	406	929	2012	1059	420	8	10	1548	4	2	2087	493	292	679	540	484	610	668	569	704	570	579	614	611	549	627	558	588	616	598	566	560	]
G [	546	538	534	540	558	537	544	581	575	527	541	524	512	447	458	795	332	210	504	715	30	55	23	1025	2002	23	129	24	1	214	1164	576	655	655	484	608	599	478	514	539	529	517	574	524	551	567	526	551	547	609	]
T [	539	478	458	482	470	463	455	439	503	522	495	482	462	511	550	465	1203	855	961	250	46	332	1607	5	14	295	67	3	8	371	141	349	443	427	433	428	522	447	456	499	536	462	488	455	475	444	476	462	523	461	]

Hypothetical CWM

A [	-0.00	0.01	0.00	-0.01	-0.01	-0.01	-0.00	-0.03	0.01	-0.02	0.04	0.00	0.00	0.04	0.06	-0.03	0.01	0.01	-0.00	-0.00	0.00	0.01	]
C [	0.01	0.00	0.00	0.01	0.03	0.01	0.01	0.05	0.03	0.02	-0.01	-0.01	0.04	-0.05	-0.02	0.06	0.01	0.00	0.02	0.01	0.00	0.00	]
G [	0.01	0.01	0.01	0.00	-0.00	0.02	0.03	0.01	-0.01	-0.01	0.04	0.05	-0.02	0.03	0.00	-0.02	0.00	0.03	0.01	0.01	0.02	0.00	]
T [	0.01	0.00	0.00	0.02	0.02	0.01	-0.01	0.00	0.00	0.03	-0.05	-0.02	0.01	-0.00	-0.03	0.01	0.00	-0.01	-0.00	0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4270

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 899

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 350

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 316

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 199

CWM

PFM

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000913.1	RFX5	ENCSR000DZW	GM12878	Homo sapiens	MA0510.3
BP000914.1	RFX5	ENCSR000ECF	H1	Homo sapiens	MA0510.3
BP000915.1	RFX5	ENCSR000EEA	HepG2	Homo sapiens	MA0510.3
BP000916.1	RFX5	ENCSR000EFD	IMR-90	Homo sapiens	MA0510.3
BP000917.1	RFX5	ENCSR000EGO	K562	Homo sapiens	MA0510.3
BP000919.1	RFX5	ENCSR064LJN	A549	Homo sapiens	MA0510.3
BP000920.1	RFX5	ENCSR924TVL	MCF-7	Homo sapiens	MA0510.3