Detailed information of deep learning profile BP000916.1

  1. Home
  2. Deep Learning Profile > BP000916.1
This page shows detailed deep learning-derived predictions and motifs for RFX5 in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000916.1
Cell line/tissue: IMR-90
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EFD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.03 0.07 -0.00 0.01 0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.04 0.02 0.00 0.00 -0.00 0.03 -0.00 -0.00 0.07 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 0.01 0.06 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.01 -0.00 0.00 0.00 ]
T [ 0.01 0.00 0.01 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 563 585 643 628 686 594 624 566 611 583 531 586 649 756 681 438 317 295 459 173 516 160 1355 178 380 1779 2388 25 1217 682 912 262 355 1502 298 519 569 822 640 563 620 618 627 620 589 603 548 569 622 644 ]
C [ 697 721 637 689 619 673 687 653 682 697 716 746 632 617 546 503 1024 674 771 1936 1336 636 102 58 1469 120 41 2403 400 330 745 392 348 380 1130 501 925 643 553 743 676 663 681 607 718 642 694 689 696 667 ]
G [ 624 629 643 598 606 653 575 621 593 615 572 597 610 546 620 447 357 456 883 240 174 128 995 2271 50 393 88 21 181 1338 604 430 1406 360 561 785 470 536 734 585 640 667 628 644 646 613 621 597 618 625 ]
T [ 661 610 622 630 634 625 659 705 659 650 726 616 654 626 698 1157 847 1120 432 196 519 1621 93 38 646 253 28 96 747 195 284 1461 436 303 556 740 581 544 618 654 609 597 609 674 592 687 682 690 609 609 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 -0.01 -0.02 -0.02 0.00 -0.02 -0.02 -0.03 0.04 0.00 -0.02 0.04 0.07 -0.03 0.01 0.02 0.01 -0.04 -0.00 0.04 -0.02 -0.01 0.00 0.01 0.00 -0.01 ]
C [ 0.01 0.00 0.00 0.01 0.03 0.02 0.01 0.04 0.04 0.03 0.01 -0.01 0.05 -0.03 -0.02 0.08 0.01 -0.00 0.02 0.02 -0.00 -0.01 0.04 -0.00 0.02 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.00 0.01 0.01 0.03 0.01 -0.00 -0.01 0.03 0.07 -0.04 0.02 0.01 -0.02 0.00 0.04 0.02 -0.00 0.03 0.01 0.01 0.03 -0.00 0.01 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.01 0.02 -0.01 -0.01 0.01 0.04 -0.05 -0.03 0.03 -0.00 -0.04 0.00 0.01 -0.02 -0.02 0.04 0.00 -0.01 0.00 0.01 -0.00 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1050

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 466

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
Showing 7 profiles of page 1 from 1 pages
  • 1 (current)