Detailed information of deep learning profile BP000919.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000919.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR064LJN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 0.04 0.06 0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.01 0.04 0.01 0.00 0.00 0.00 0.03 -0.00 -0.00 0.05 0.00 -0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.00 -0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 ]

Frequency matrix

       
A [ 303 289 292 330 324 280 320 271 273 245 274 272 305 328 282 218 182 156 150 23 443 27 741 60 108 1245 1350 4 576 313 218 261 328 363 256 267 298 361 269 280 323 281 290 312 284 301 280 259 272 327 ]
C [ 415 436 392 370 362 433 390 387 428 472 440 479 392 375 315 230 568 410 624 1278 652 287 19 9 1079 6 2 1351 397 233 566 383 298 378 449 397 471 396 418 424 417 387 408 379 408 410 389 416 412 381 ]
G [ 360 374 385 369 392 374 347 393 343 331 347 319 363 362 469 202 117 310 462 32 72 12 600 1289 6 85 8 0 193 704 344 392 488 358 383 386 313 325 348 354 324 385 376 372 389 349 385 369 378 364 ]
T [ 288 267 297 297 288 279 309 315 322 318 305 296 306 301 300 716 499 490 130 33 199 1040 6 8 173 30 6 11 200 116 238 330 252 267 278 316 284 284 331 308 302 313 292 303 285 306 312 322 304 294 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.00 -0.01 -0.00 -0.02 0.00 -0.02 0.03 0.00 -0.01 0.04 0.06 -0.03 0.01 0.01 -0.00 -0.01 0.00 0.01 ]
C [ 0.00 -0.00 0.00 0.00 0.02 0.02 0.01 0.04 0.02 0.01 -0.00 -0.01 0.04 -0.04 -0.03 0.05 0.01 -0.00 0.01 0.00 0.00 -0.00 ]
G [ 0.01 0.01 0.00 -0.00 -0.01 0.01 0.02 0.00 -0.01 -0.02 0.03 0.05 -0.03 0.02 -0.01 -0.02 0.01 0.02 0.01 0.01 0.02 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.01 0.01 -0.01 -0.01 0.00 0.04 -0.04 -0.03 0.02 -0.01 -0.02 0.01 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2095

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 757

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 215

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
Showing 7 profiles of page 1 from 1 pages
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