JASPAR - RFX5 - BP000920.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX5 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX5
Model ID:	BP000920.1
Cell line/tissue:	MCF-7
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0510.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48382
Source:	ENCSR924TVL
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4015

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	-0.00	0.00	-0.00	0.02	0.00	-0.00	0.03	0.06	-0.00	0.01	0.00	-0.00	-0.00	]
C [	0.00	0.01	0.00	0.00	0.04	0.02	0.00	0.00	0.00	0.03	-0.00	-0.00	0.06	-0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	0.00	0.01	0.00	-0.00	0.00	0.01	0.05	-0.00	0.00	0.00	-0.00	0.00	0.01	0.00	0.00	]
T [	0.01	0.00	0.01	-0.00	-0.00	-0.00	0.03	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	996	1062	934	984	945	854	1009	903	1033	868	874	917	811	828	782	902	1052	1142	972	514	307	469	645	90	949	105	2122	244	366	3474	3938	6	2034	893	1006	853	960	1052	852	754	942	1106	923	885	928	899	943	958	916	931	]
C [	1064	1094	1078	1058	1051	1314	1095	1251	1109	1241	1231	1068	1219	1164	1266	1373	1073	982	771	955	1858	954	1320	3650	2313	953	40	66	2967	20	16	3977	824	682	1268	1062	865	1154	1218	1020	1321	1147	1054	1209	1142	1050	1100	1141	1066	1176	]
G [	1066	1023	1067	971	946	940	1033	984	1042	993	1014	986	910	1014	1052	914	859	899	1155	657	473	716	1599	167	161	39	1836	3676	63	361	54	5	351	2090	1030	1204	1209	993	1091	1150	880	884	1020	978	1016	1117	1006	984	1056	999	]
T [	889	836	936	1002	1073	907	878	877	831	913	896	1044	1075	1009	915	826	1031	992	1117	1889	1377	1876	451	108	592	2918	17	29	619	160	7	27	806	350	711	896	981	816	854	1091	872	878	1018	943	929	949	966	932	977	909	]

Hypothetical CWM

A [	0.01	0.00	-0.01	-0.01	-0.01	0.00	-0.02	0.00	-0.02	0.03	0.00	-0.01	0.04	0.06	-0.04	0.01	0.01	0.00	-0.01	0.00	0.01	]
C [	-0.00	0.00	0.01	0.02	0.01	0.01	0.04	0.02	0.02	0.00	-0.01	0.04	-0.04	-0.01	0.06	0.00	0.00	0.01	0.01	0.00	0.00	]
G [	0.00	0.01	0.00	0.00	0.01	0.02	0.01	-0.01	-0.02	0.03	0.05	-0.03	0.02	-0.00	-0.02	0.01	0.02	0.01	0.01	0.02	0.00	]
T [	0.00	0.00	0.01	0.01	0.01	-0.01	-0.01	-0.00	0.04	-0.05	-0.02	0.02	-0.00	-0.04	0.01	-0.00	-0.01	-0.00	0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4293

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2815

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 597

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 186

CWM

PFM

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000913.1	RFX5	ENCSR000DZW	GM12878	Homo sapiens	MA0510.3
BP000914.1	RFX5	ENCSR000ECF	H1	Homo sapiens	MA0510.3
BP000915.1	RFX5	ENCSR000EEA	HepG2	Homo sapiens	MA0510.3
BP000916.1	RFX5	ENCSR000EFD	IMR-90	Homo sapiens	MA0510.3
BP000917.1	RFX5	ENCSR000EGO	K562	Homo sapiens	MA0510.3
BP000918.1	RFX5	ENCSR000EHY	SK-N-SH	Homo sapiens	MA0510.3
BP000919.1	RFX5	ENCSR064LJN	A549	Homo sapiens	MA0510.3