Detailed information of deep learning profile BP000917.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000917.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EGO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.04 0.07 -0.00 0.01 0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.04 0.03 0.00 0.00 0.00 0.04 0.00 -0.00 0.07 -0.00 -0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.01 0.07 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 0.02 0.00 0.00 0.01 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.00 0.02 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 243 242 229 271 245 233 235 215 271 232 212 270 260 274 301 136 89 78 177 51 204 45 594 54 117 829 974 20 476 261 308 152 131 554 128 211 204 296 242 235 224 206 268 233 237 234 208 196 216 243 ]
C [ 289 309 275 247 269 266 230 295 264 291 308 285 255 237 205 186 497 239 339 867 624 252 58 7 671 11 4 960 170 111 349 176 153 187 413 234 374 276 237 293 282 302 291 258 310 294 278 279 276 298 ]
G [ 251 250 291 244 258 274 288 270 233 243 219 261 267 215 241 176 100 177 384 52 64 51 360 958 23 136 31 8 103 570 270 155 571 160 223 327 186 224 300 242 282 291 259 268 259 241 258 269 274 265 ]
T [ 243 225 231 264 254 253 273 246 258 260 287 210 244 300 279 528 340 532 126 56 134 678 14 7 215 50 17 38 277 84 99 543 171 125 262 254 262 230 247 256 238 227 208 267 220 257 282 282 260 220 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 -0.01 -0.03 0.01 -0.01 -0.01 -0.02 0.03 0.00 -0.01 0.05 0.07 -0.02 0.02 0.02 0.01 -0.01 -0.00 0.04 -0.02 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.04 0.02 0.01 0.05 0.04 0.02 0.02 -0.03 0.06 -0.03 -0.03 0.07 0.01 -0.01 0.02 0.02 0.00 -0.00 0.04 0.00 0.02 0.01 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.00 0.01 -0.01 0.02 0.03 0.01 -0.01 -0.01 0.03 0.08 -0.04 0.04 -0.00 -0.03 0.01 0.04 0.02 0.00 0.03 0.01 0.00 0.03 0.00 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.00 0.00 -0.01 0.01 0.01 0.01 0.02 0.01 0.03 -0.01 -0.01 0.00 0.04 -0.04 -0.02 0.03 -0.01 -0.01 0.01 0.00 -0.01 -0.02 0.04 0.00 -0.01 0.01 0.01 0.00 -0.01 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 517

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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