JASPAR - RFX5 - BP000915.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX5 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX5
Model ID:	BP000915.1
Cell line/tissue:	HepG2
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0510.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48382
Source:	ENCSR000EEA
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 2104

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.03	-0.00	-0.00	-0.00	0.01	0.01	0.01	]
C [	0.00	0.00	0.02	0.00	-0.00	-0.00	0.00	-0.00	0.06	0.01	-0.00	0.00	0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.08	-0.00	0.00	0.04	0.00	-0.00	0.00	0.02	0.05	0.00	0.00	0.01	0.00	]
T [	-0.00	0.00	0.00	0.01	0.00	0.08	0.05	-0.00	0.00	0.02	-0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	464	458	520	454	457	423	458	473	510	470	487	479	410	437	565	434	408	501	425	355	135	392	8	3	59	283	12	6	1605	302	49	245	923	763	1036	457	493	498	385	437	509	544	498	423	477	431	468	458	444	495	]
C [	571	623	556	546	569	593	589	556	577	529	495	572	504	476	621	606	578	645	679	575	1177	215	1	11	145	21	1965	928	16	72	60	762	420	247	385	738	487	455	570	592	536	537	542	570	535	572	563	588	518	541	]
G [	564	548	577	647	615	616	585	611	572	622	690	580	592	745	581	679	658	445	582	712	322	513	2095	6	4	1651	18	11	458	1114	1972	831	505	937	443	424	608	658	723	685	628	613	627	642	640	618	627	564	680	595	]
T [	505	475	451	457	463	472	472	464	445	483	432	473	598	446	337	385	460	513	418	462	470	984	0	2084	1896	149	109	1159	25	616	23	266	256	157	240	485	516	493	426	390	431	410	437	469	452	483	446	494	462	473	]

Hypothetical CWM

A [	-0.00	-0.00	0.01	-0.00	-0.02	-0.00	0.01	-0.05	-0.00	0.02	-0.02	-0.05	0.04	0.00	-0.00	-0.01	0.01	0.02	0.02	0.00	0.00	0.00	]
C [	0.01	0.02	0.01	0.01	0.03	0.01	-0.03	-0.00	0.03	-0.03	0.06	0.04	-0.02	-0.00	0.01	0.03	0.02	0.01	0.00	0.01	0.01	0.00	]
G [	0.01	0.00	0.01	0.02	0.00	0.01	0.08	-0.02	-0.05	0.05	-0.03	-0.01	0.03	0.03	0.05	0.01	0.02	0.03	0.01	0.00	0.00	0.01	]
T [	0.01	0.00	-0.00	0.01	0.02	0.02	-0.04	0.08	0.05	-0.01	0.00	0.04	-0.02	0.00	-0.02	0.01	-0.02	-0.02	-0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2663

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1428

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 860

CWM

PFM

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000913.1	RFX5	ENCSR000DZW	GM12878	Homo sapiens	MA0510.3
BP000914.1	RFX5	ENCSR000ECF	H1	Homo sapiens	MA0510.3
BP000916.1	RFX5	ENCSR000EFD	IMR-90	Homo sapiens	MA0510.3
BP000917.1	RFX5	ENCSR000EGO	K562	Homo sapiens	MA0510.3
BP000918.1	RFX5	ENCSR000EHY	SK-N-SH	Homo sapiens	MA0510.3
BP000919.1	RFX5	ENCSR064LJN	A549	Homo sapiens	MA0510.3
BP000920.1	RFX5	ENCSR924TVL	MCF-7	Homo sapiens	MA0510.3