Detailed information of deep learning profile BP000915.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000915.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EEA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 0.05 0.08 0.00 0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.05 0.02 0.00 -0.00 0.00 0.04 0.00 -0.00 0.08 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 -0.00 0.01 0.06 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 ]
T [ 0.01 0.01 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 473 462 494 446 483 452 469 437 410 431 390 426 493 516 485 240 157 256 266 23 616 25 1159 109 149 1896 2084 0 984 470 462 418 513 460 385 337 446 598 473 432 483 445 464 472 472 463 457 451 475 505 ]
C [ 595 680 564 627 618 640 642 627 613 628 685 723 658 608 424 443 937 505 831 1972 1114 458 11 18 1651 4 6 2095 513 322 712 582 445 658 679 581 745 592 580 690 622 572 611 585 616 615 647 577 548 564 ]
G [ 541 518 588 563 572 535 570 542 537 536 592 570 455 487 738 385 247 420 762 60 72 16 928 1965 21 145 11 1 215 1177 575 679 645 578 606 621 476 504 572 495 529 577 556 589 593 569 546 556 623 571 ]
T [ 495 444 458 468 431 477 423 498 544 509 437 385 498 493 457 1036 763 923 245 49 302 1605 6 12 283 59 3 8 392 135 355 425 501 408 434 565 437 410 479 487 470 510 473 458 423 457 454 520 458 464 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.02 0.00 -0.02 0.04 0.00 -0.01 0.05 0.08 -0.04 0.02 0.02 0.01 -0.00 0.00 0.01 ]
C [ 0.01 0.00 0.00 0.01 0.03 0.02 0.01 0.05 0.03 0.03 -0.01 -0.03 0.05 -0.05 -0.02 0.08 0.01 0.00 0.02 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.00 0.01 0.02 0.03 0.01 -0.00 -0.02 0.04 0.06 -0.03 0.03 -0.00 -0.03 0.01 0.03 0.01 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.02 0.02 0.01 -0.01 -0.00 0.00 0.04 -0.05 -0.02 0.02 -0.00 -0.05 0.01 -0.00 -0.02 -0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1428

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 860

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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