Detailed information of deep learning profile BP000914.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000914.1
Cell line/tissue: H1
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000ECF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.01 0.00 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.00 0.00 0.02 0.00 0.01 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.07 -0.00 -0.00 0.04 0.00 0.00 0.00 0.04 0.05 0.00 0.00 0.02 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.07 0.04 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 401 394 452 424 417 395 410 359 382 361 406 371 382 405 403 381 248 283 846 210 119 430 54 22 112 332 20 30 1166 221 89 208 924 535 895 467 452 422 340 404 418 421 400 388 408 376 414 401 392 416 ]
C [ 426 491 425 447 417 449 425 423 506 432 404 456 401 344 581 341 298 901 328 550 982 147 16 51 211 32 1575 716 36 64 90 698 266 160 245 463 380 397 436 429 435 422 443 467 461 426 452 458 435 421 ]
G [ 535 487 481 487 500 519 482 503 481 484 561 453 494 581 363 762 326 261 297 498 191 343 1640 28 42 1180 21 87 445 1149 1462 539 374 910 379 359 400 483 521 567 518 490 521 464 464 508 439 495 538 465 ]
T [ 361 351 365 365 389 360 406 438 354 446 352 443 446 393 376 239 851 278 252 465 431 803 13 1622 1358 179 107 890 76 289 82 278 159 118 204 434 491 421 426 323 352 390 359 404 390 413 418 369 358 421 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 0.03 -0.02 -0.03 -0.00 0.00 -0.05 -0.02 0.03 -0.03 -0.07 0.04 0.00 -0.02 -0.02 0.02 0.01 0.02 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 0.02 0.00 0.00 0.03 -0.00 0.02 0.03 -0.00 -0.03 0.00 0.02 -0.05 0.07 0.03 -0.02 -0.02 -0.01 0.04 0.01 -0.01 -0.01 0.00 0.01 0.01 ]
G [ -0.00 0.01 0.01 -0.00 0.03 -0.01 -0.00 0.01 0.01 -0.01 0.01 0.08 -0.03 -0.04 0.06 -0.03 0.00 0.02 0.05 0.05 0.00 0.01 0.03 0.00 -0.00 -0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.02 0.03 0.00 -0.03 0.00 0.02 0.01 -0.05 0.07 0.05 -0.03 -0.02 0.04 -0.04 -0.03 -0.02 -0.00 -0.03 -0.03 -0.01 0.00 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 602

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
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