Detailed information of deep learning profile BP000914.1

  1. Home
  2. Deep Learning Profile > BP000914.1
This page shows detailed deep learning-derived predictions and motifs for RFX5 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000914.1
Cell line/tissue: H1
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000ECF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.04 0.07 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 0.05 0.04 0.00 0.00 0.00 0.04 -0.00 -0.00 0.07 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.01 0.00 0.02 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.00 0.01 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 421 358 369 418 413 390 404 359 390 352 323 426 421 491 434 204 118 159 278 82 289 76 890 107 179 1358 1622 13 803 431 465 252 278 851 239 376 393 446 443 352 446 354 438 406 360 389 365 365 351 361 ]
C [ 465 538 495 439 508 464 464 521 490 518 567 521 483 400 359 379 910 374 539 1462 1149 445 87 21 1180 42 28 1640 343 191 498 297 261 326 762 363 581 494 453 561 484 481 503 482 519 500 487 481 487 535 ]
G [ 421 435 458 452 426 461 467 443 422 435 429 436 397 380 463 245 160 266 698 90 64 36 716 1575 32 211 51 16 147 982 550 328 901 298 341 581 344 401 456 404 432 506 423 425 449 417 447 425 491 426 ]
T [ 416 392 401 414 376 408 388 400 421 418 404 340 422 452 467 895 535 924 208 89 221 1166 30 20 332 112 22 54 430 119 210 846 283 248 381 403 405 382 371 406 361 382 359 410 395 417 424 452 394 401 ]

Hypothetical CWM

   
A [ -0.01 0.00 0.00 -0.01 -0.03 -0.03 -0.00 -0.02 -0.03 -0.04 0.04 -0.02 -0.03 0.05 0.07 -0.05 0.01 0.02 0.00 -0.03 0.00 0.03 -0.02 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 -0.00 -0.00 0.00 0.03 0.01 0.00 0.05 0.05 0.02 0.00 -0.03 0.06 -0.04 -0.03 0.08 0.01 -0.01 0.01 0.01 -0.00 -0.01 0.03 -0.00 0.01 0.01 -0.00 ]
G [ 0.01 0.01 0.00 -0.01 -0.01 0.01 0.04 -0.01 -0.02 -0.02 0.03 0.07 -0.05 0.02 0.00 -0.03 -0.00 0.03 0.02 -0.00 0.03 0.00 0.00 0.02 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.02 0.01 0.02 -0.02 -0.02 0.00 0.04 -0.07 -0.03 0.03 -0.02 -0.05 0.00 -0.00 -0.03 -0.02 0.03 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 602

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000913.1 RFX5 ENCSR000DZW GM12878 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
Showing 7 profiles of page 1 from 1 pages
  • 1 (current)