Detailed information of deep learning profile BP000913.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000913.1
Cell line/tissue: GM12878
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000DZW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.01 ]
C [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.05 0.01 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.02 0.04 0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 0.00 0.01 -0.00 0.06 0.04 -0.00 -0.00 0.02 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 294 327 287 302 264 296 283 309 272 321 319 258 296 323 258 266 278 345 218 78 227 4 1 46 187 9 6 1005 195 40 154 548 514 735 279 342 303 283 313 311 306 301 312 300 266 305 294 287 285 318 ]
C [ 362 359 391 365 364 377 346 367 340 324 361 316 277 372 384 324 473 382 337 715 176 0 9 80 12 1259 543 14 39 34 438 295 126 213 509 306 306 318 310 321 349 370 351 361 378 341 356 337 337 342 ]
G [ 391 368 380 360 403 343 413 362 414 419 369 388 472 396 460 390 277 345 478 219 351 1328 6 6 1039 11 11 282 732 1238 594 349 579 236 242 343 431 465 443 418 390 382 383 378 397 374 380 418 411 379 ]
T [ 286 279 275 306 302 317 291 295 307 269 284 371 288 242 231 353 305 261 300 321 579 1 1317 1201 95 54 773 32 367 21 147 141 114 149 303 342 293 267 267 283 288 280 287 294 292 313 303 291 300 294 ]

Hypothetical CWM

   
A [ 0.00 -0.01 0.00 0.00 0.00 -0.01 0.00 0.01 -0.00 -0.02 -0.00 0.00 -0.03 0.00 0.02 -0.01 -0.04 0.03 0.01 -0.00 -0.01 0.01 0.01 0.02 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.01 0.01 0.00 0.02 0.01 0.01 0.03 0.01 -0.03 0.00 0.02 -0.03 0.05 0.03 -0.01 -0.01 0.00 0.02 0.01 -0.00 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.02 0.00 -0.00 0.01 0.01 0.00 0.01 0.07 -0.03 -0.04 0.04 -0.02 -0.00 0.02 0.03 0.04 0.01 0.02 0.02 0.00 -0.00 0.00 0.01 ]
T [ -0.00 0.00 -0.00 -0.00 -0.01 0.02 0.00 -0.01 0.00 0.02 0.02 -0.02 0.06 0.04 -0.01 -0.00 0.04 -0.02 0.00 -0.02 0.00 -0.01 -0.01 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3399

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 543

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
Showing 7 profiles of page 1 from 1 pages
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