Detailed information of deep learning profile BP000913.1

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This page shows detailed deep learning-derived predictions and motifs for RFX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX5
Model ID: BP000913.1
Cell line/tissue: GM12878
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0510.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000DZW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 0.04 0.06 -0.00 0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.04 0.02 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.05 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 294 300 291 303 313 292 294 287 280 288 283 267 267 293 342 303 149 114 141 147 21 367 32 773 54 95 1201 1317 1 579 321 300 261 305 353 231 242 288 371 284 269 307 295 291 317 302 306 275 279 286 ]
C [ 379 411 418 380 374 397 378 383 382 390 418 443 465 431 343 242 236 579 349 594 1238 732 282 11 11 1039 6 6 1328 351 219 478 345 277 390 460 396 472 388 369 419 414 362 413 343 403 360 380 368 391 ]
G [ 342 337 337 356 341 378 361 351 370 349 321 310 318 306 306 509 213 126 295 438 34 39 14 543 1259 12 80 9 0 176 715 337 382 473 324 384 372 277 316 361 324 340 367 346 377 364 365 391 359 362 ]
T [ 318 285 287 294 305 266 300 312 301 306 311 313 283 303 342 279 735 514 548 154 40 195 1005 6 9 187 46 1 4 227 78 218 345 278 266 258 323 296 258 319 321 272 309 283 296 264 302 287 327 294 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.01 -0.01 0.00 -0.02 0.00 -0.02 0.04 -0.00 -0.01 0.04 0.06 -0.02 0.02 0.02 0.00 -0.01 0.00 0.02 -0.01 -0.00 -0.00 0.00 -0.00 ]
C [ 0.01 0.00 -0.00 0.00 0.02 0.02 0.01 0.04 0.03 0.02 -0.00 -0.02 0.04 -0.04 -0.03 0.07 0.01 0.00 0.01 0.01 -0.00 0.00 0.02 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 -0.00 -0.00 0.01 0.02 0.00 -0.01 -0.01 0.03 0.05 -0.03 0.02 0.00 -0.03 0.01 0.03 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.01 0.01 -0.01 -0.00 0.01 0.03 -0.04 -0.01 0.02 0.00 -0.03 0.00 -0.00 -0.02 -0.00 0.01 0.00 -0.01 0.00 0.00 0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3399

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 543

CWM

PFM

     

HCWM

7 profiles found for the same TF (RFX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000914.1 RFX5 ENCSR000ECF H1 Homo sapiens MA0510.3
BP000915.1 RFX5 ENCSR000EEA HepG2 Homo sapiens MA0510.3
BP000916.1 RFX5 ENCSR000EFD IMR-90 Homo sapiens MA0510.3
BP000917.1 RFX5 ENCSR000EGO K562 Homo sapiens MA0510.3
BP000918.1 RFX5 ENCSR000EHY SK-N-SH Homo sapiens MA0510.3
BP000919.1 RFX5 ENCSR064LJN A549 Homo sapiens MA0510.3
BP000920.1 RFX5 ENCSR924TVL MCF-7 Homo sapiens MA0510.3
Showing 7 profiles of page 1 from 1 pages
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