JASPAR - ESRRA - BP000822.1

This page shows detailed deep learning-derived predictions and motifs for ESRRA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ESRRA
Model ID:	BP000822.1
Cell line/tissue:	A549
Class:	Nuclear receptors with C4 zinc fingers
Family:	Steroid hormone receptors (NR3)
JASPAR ID:	MA0592.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P11474
Source:	ENCSR473SUA
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2540

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	0.00	-0.00	0.00	0.02	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.04	0.03	0.00	0.00	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.03	-0.00	0.00	0.00	0.00	-0.00	0.01	0.00	0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	0.02	-0.00	-0.00	0.00	-0.00	0.03	0.02	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	534	545	541	568	580	498	522	578	535	513	599	539	517	553	647	527	494	568	552	467	598	558	498	522	24	137	2027	24	22	8	50	92	973	557	572	662	623	510	512	539	594	522	485	560	610	606	502	501	577	526	]
C [	736	693	718	717	651	782	707	703	726	777	725	750	686	690	635	783	751	725	682	924	657	794	623	495	194	103	332	2515	2435	93	438	504	353	678	852	632	620	653	779	797	746	791	637	654	719	681	778	759	706	794	]
G [	630	685	718	596	682	605	641	643	643	656	583	603	634	611	663	589	602	657	711	610	560	726	605	917	57	2295	28	1	27	10	13	1377	993	973	554	650	734	778	563	669	621	551	631	656	597	664	617	618	576	577	]
T [	640	617	563	659	627	655	670	616	636	594	633	648	703	686	595	641	693	590	595	539	725	462	814	606	2265	5	153	0	56	2429	2039	567	221	332	562	596	563	599	686	535	579	676	787	670	614	589	643	662	681	643	]

Hypothetical CWM

A [	-0.00	0.00	-0.00	-0.00	-0.03	-0.00	0.03	-0.01	-0.02	-0.03	-0.01	-0.02	0.01	-0.00	-0.00	-0.00	]
C [	0.00	0.00	-0.00	-0.01	0.01	-0.01	-0.00	0.04	0.03	-0.01	0.00	0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.02	0.03	-0.03	-0.02	-0.00	-0.01	-0.03	0.01	0.01	0.01	0.00	0.00	]
T [	-0.00	-0.01	-0.00	0.00	0.02	-0.03	-0.01	-0.03	-0.02	0.03	0.02	0.00	-0.01	-0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 232

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 145

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 22

CWM

PFM

HCWM

6 profiles found for the same TF (ESRRA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000818.1	ESRRA	ENCSR000DYQ	GM12878	Homo sapiens	MA0592.4
BP000819.1	ESRRA	ENCSR000EEW	HepG2	Homo sapiens	MA0592.4
BP000820.1	ESRRA	ENCSR029OPK	WTC11	Homo sapiens	MA0592.4
BP000821.1	ESRRA	ENCSR267NVP	HepG2	Homo sapiens	MA0592.4
BP000823.1	ESRRA	ENCSR486IFJ	K562	Homo sapiens	MA0592.4
BP000824.1	ESRRA	ENCSR954WVZ	MCF-7	Homo sapiens	MA0592.4