JASPAR - ESRRA - BP000818.1

This page shows detailed deep learning-derived predictions and motifs for ESRRA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ESRRA
Model ID:	BP000818.1
Cell line/tissue:	GM12878
Class:	Nuclear receptors with C4 zinc fingers
Family:	Steroid hormone receptors (NR3)
JASPAR ID:	MA0592.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P11474
Source:	ENCSR000DYQ
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1492

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	0.00	-0.00	0.00	0.04	0.00	-0.00	0.00	-0.00	-0.00	0.01	0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.07	0.04	-0.00	0.00	0.00	-0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.00	0.04	-0.00	0.00	0.00	0.00	-0.00	0.02	0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	0.04	-0.00	-0.00	0.00	-0.00	0.05	0.04	0.00	-0.00	-0.00	]

Frequency matrix

A [	345	311	345	324	344	363	373	369	331	296	432	330	306	353	270	260	345	347	264	326	7	81	1357	2	12	0	15	42	691	389	354	488	454	344	282	311	380	298	320	317	427	449	322	301	269	297	329	295	334	363	]
C [	401	442	418	435	418	467	422	449	382	396	367	475	457	395	414	573	339	406	347	187	48	97	69	1489	1459	12	136	272	125	354	473	297	294	351	452	470	379	477	356	332	379	360	504	452	396	468	365	462	367	362	]
G [	350	343	341	369	339	310	356	331	349	396	337	314	323	368	382	325	332	452	329	647	7	1313	5	1	6	1	8	981	537	572	348	351	406	460	316	318	305	338	324	403	335	397	319	335	358	343	345	364	340	404	]
T [	396	396	388	364	391	352	341	343	430	404	356	373	406	376	426	334	476	287	552	332	1430	1	61	0	15	1479	1333	197	139	177	317	356	338	337	442	393	428	379	492	440	351	286	347	404	469	384	453	371	451	363	]

Hypothetical CWM

A [	0.00	0.00	-0.00	0.00	-0.03	0.00	0.05	-0.01	-0.02	-0.05	-0.01	-0.02	0.02	0.01	-0.00	0.00	]
C [	0.00	0.01	0.01	-0.01	0.02	-0.00	0.00	0.07	0.04	-0.01	0.00	0.01	-0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.03	0.04	-0.04	-0.02	0.00	-0.00	-0.04	0.02	0.01	0.01	0.01	0.00	]
T [	-0.00	-0.00	0.00	0.01	0.04	-0.04	-0.01	-0.05	-0.03	0.05	0.04	-0.00	-0.01	-0.01	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 109

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 66

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 50

CWM

PFM

HCWM

6 profiles found for the same TF (ESRRA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000819.1	ESRRA	ENCSR000EEW	HepG2	Homo sapiens	MA0592.4
BP000820.1	ESRRA	ENCSR029OPK	WTC11	Homo sapiens	MA0592.4
BP000821.1	ESRRA	ENCSR267NVP	HepG2	Homo sapiens	MA0592.4
BP000822.1	ESRRA	ENCSR473SUA	A549	Homo sapiens	MA0592.4
BP000823.1	ESRRA	ENCSR486IFJ	K562	Homo sapiens	MA0592.4
BP000824.1	ESRRA	ENCSR954WVZ	MCF-7	Homo sapiens	MA0592.4