JASPAR - ESRRA - BP000822.1

This page shows detailed deep learning-derived predictions and motifs for ESRRA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ESRRA
Model ID:	BP000822.1
Cell line/tissue:	A549
Class:	Nuclear receptors with C4 zinc fingers
Family:	Steroid hormone receptors (NR3)
JASPAR ID:	MA0592.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P11474
Source:	ENCSR473SUA
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2540

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	0.02	0.03	-0.00	0.00	-0.00	-0.00	0.02	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.01	-0.00	0.00	0.00	0.00	-0.00	0.03	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.00	0.00	0.03	0.04	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
T [	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.02	0.00	-0.00	0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	643	681	662	643	589	614	670	787	676	579	535	686	599	563	596	562	332	221	567	2039	2429	56	0	153	5	2265	606	814	462	725	539	595	590	693	641	595	686	703	648	633	594	636	616	670	655	627	659	563	617	640	]
C [	577	576	618	617	664	597	656	631	551	621	669	563	778	734	650	554	973	993	1377	13	10	27	1	28	2295	57	917	605	726	560	610	711	657	602	589	663	611	634	603	583	656	643	643	641	605	682	596	718	685	630	]
G [	794	706	759	778	681	719	654	637	791	746	797	779	653	620	632	852	678	353	504	438	93	2435	2515	332	103	194	495	623	794	657	924	682	725	751	783	635	690	686	750	725	777	726	703	707	782	651	717	718	693	736	]
T [	526	577	501	502	606	610	560	485	522	594	539	512	510	623	662	572	557	973	92	50	8	22	24	2027	137	24	522	498	558	598	467	552	568	494	527	647	553	517	539	599	513	535	578	522	498	580	568	541	545	534	]

Hypothetical CWM

A [	-0.00	-0.00	-0.01	-0.01	0.00	0.02	0.03	-0.02	-0.03	-0.01	-0.03	0.02	0.00	-0.00	-0.01	-0.00	]
C [	0.00	0.00	0.01	0.01	0.01	-0.03	-0.01	-0.00	-0.02	-0.03	0.03	-0.02	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.00	0.00	-0.01	0.03	0.04	-0.00	-0.01	0.01	-0.01	-0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.01	-0.02	-0.01	-0.03	-0.02	-0.01	0.03	-0.00	-0.03	-0.00	-0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 232

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 145

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 22

CWM

PFM

HCWM

6 profiles found for the same TF (ESRRA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000818.1	ESRRA	ENCSR000DYQ	GM12878	Homo sapiens	MA0592.4
BP000819.1	ESRRA	ENCSR000EEW	HepG2	Homo sapiens	MA0592.4
BP000820.1	ESRRA	ENCSR029OPK	WTC11	Homo sapiens	MA0592.4
BP000821.1	ESRRA	ENCSR267NVP	HepG2	Homo sapiens	MA0592.4
BP000823.1	ESRRA	ENCSR486IFJ	K562	Homo sapiens	MA0592.4
BP000824.1	ESRRA	ENCSR954WVZ	MCF-7	Homo sapiens	MA0592.4