JASPAR - ESRRA - BP000818.1

This page shows detailed deep learning-derived predictions and motifs for ESRRA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ESRRA
Model ID:	BP000818.1
Cell line/tissue:	GM12878
Class:	Nuclear receptors with C4 zinc fingers
Family:	Steroid hormone receptors (NR3)
JASPAR ID:	MA0592.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P11474
Source:	ENCSR000DYQ
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1492

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.04	0.05	-0.00	0.00	-0.00	-0.00	0.04	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.02	-0.00	0.00	0.00	0.00	-0.00	0.04	-0.00	0.01	0.00	0.00	0.00	]
G [	0.00	-0.00	0.00	0.00	-0.00	0.04	0.07	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
T [	0.00	0.01	-0.00	-0.00	0.00	-0.00	0.00	0.04	0.00	-0.00	0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	363	451	371	453	384	469	404	347	286	351	440	492	379	428	393	442	337	338	356	317	177	139	197	1333	1479	15	0	61	1	1430	332	552	287	476	334	426	376	406	373	356	404	430	343	341	352	391	364	388	396	396	]
C [	404	340	364	345	343	358	335	319	397	335	403	324	338	305	318	316	460	406	351	348	572	537	981	8	1	6	1	5	1313	7	647	329	452	332	325	382	368	323	314	337	396	349	331	356	310	339	369	341	343	350	]
G [	362	367	462	365	468	396	452	504	360	379	332	356	477	379	470	452	351	294	297	473	354	125	272	136	12	1459	1489	69	97	48	187	347	406	339	573	414	395	457	475	367	396	382	449	422	467	418	435	418	442	401	]
T [	363	334	295	329	297	269	301	322	449	427	317	320	298	380	311	282	344	454	488	354	389	691	42	15	0	12	2	1357	81	7	326	264	347	345	260	270	353	306	330	432	296	331	369	373	363	344	324	345	311	345	]

Hypothetical CWM

A [	-0.00	0.00	-0.01	-0.01	-0.00	0.04	0.05	-0.03	-0.05	-0.01	-0.04	0.04	0.01	0.00	-0.00	-0.00	]
C [	0.00	0.01	0.01	0.01	0.02	-0.04	-0.00	0.00	-0.02	-0.04	0.04	-0.03	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.01	0.01	0.00	-0.01	0.04	0.07	0.00	-0.00	0.02	-0.01	0.01	0.01	0.00	]
T [	0.00	-0.00	0.01	0.02	-0.02	-0.01	-0.05	-0.02	-0.01	0.05	0.00	-0.03	0.00	-0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 109

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 66

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 50

CWM

PFM

HCWM

6 profiles found for the same TF (ESRRA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000819.1	ESRRA	ENCSR000EEW	HepG2	Homo sapiens	MA0592.4
BP000820.1	ESRRA	ENCSR029OPK	WTC11	Homo sapiens	MA0592.4
BP000821.1	ESRRA	ENCSR267NVP	HepG2	Homo sapiens	MA0592.4
BP000822.1	ESRRA	ENCSR473SUA	A549	Homo sapiens	MA0592.4
BP000823.1	ESRRA	ENCSR486IFJ	K562	Homo sapiens	MA0592.4
BP000824.1	ESRRA	ENCSR954WVZ	MCF-7	Homo sapiens	MA0592.4