Detailed information of deep learning profile BP000795.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000795.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR504HOI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.06 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 0.01 0.00 0.00 -0.00 0.00 0.01 0.04 0.00 0.04 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 395 268 279 263 245 469 462 296 306 252 259 445 277 269 486 417 436 186 127 408 16 2 255 81 718 20 765 250 102 12 294 357 545 380 549 434 423 384 255 229 311 304 419 295 252 449 404 291 279 295 ]
C [ 329 349 285 288 419 263 287 419 327 315 503 322 257 267 307 330 264 199 164 218 1247 1251 180 7 226 16 27 18 6 6 251 549 138 193 176 221 262 279 230 271 241 239 249 255 274 281 269 390 407 398 ]
G [ 262 259 439 451 292 248 260 237 384 234 240 230 499 468 208 192 348 123 382 276 5 3 31 16 82 4 14 30 1156 1240 302 190 182 241 339 338 299 346 415 485 478 422 290 449 490 277 317 287 285 271 ]
T [ 289 399 272 273 319 295 266 323 258 474 273 278 242 271 274 336 227 767 602 373 7 19 809 1171 249 1235 469 977 11 17 428 179 410 461 211 282 291 266 375 290 245 310 317 276 259 268 285 307 304 311 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.00 0.00 -0.01 -0.04 0.02 0.02 0.04 -0.00 0.04 0.02 0.01 -0.02 0.00 0.00 0.01 -0.00 ]
C [ -0.00 0.01 -0.00 0.01 0.07 0.07 -0.03 -0.04 -0.02 -0.02 -0.04 -0.02 -0.03 -0.02 0.00 0.01 -0.01 0.00 ]
G [ 0.01 -0.01 0.01 0.00 -0.02 -0.03 -0.01 -0.04 -0.01 -0.02 -0.04 -0.03 0.06 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.01 0.01 0.01 0.01 -0.02 0.01 0.02 0.04 0.00 0.04 0.02 0.03 -0.04 -0.01 0.01 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 86

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages