Detailed information of deep learning profile BP000793.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000793.1
Cell line/tissue: MCF-7
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BVA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 0.05 0.00 0.03 0.01 0.00 -0.00 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 980 841 900 817 909 833 821 825 879 953 833 847 1006 871 885 803 811 1298 802 551 741 80 1 2316 1703 3185 1130 2887 1932 86 39 1140 1690 1649 816 910 829 759 775 783 895 921 781 781 808 814 915 890 811 854 ]
C [ 858 844 896 943 846 837 992 926 847 910 943 1023 886 908 847 1074 1030 787 674 526 831 3247 2998 190 105 16 246 145 101 1 30 1126 828 372 653 738 755 1048 959 749 806 842 922 843 868 831 836 905 933 911 ]
G [ 752 905 836 828 835 860 831 766 854 756 732 832 754 810 885 730 646 580 376 1181 913 40 1 111 180 81 83 79 244 3333 3293 544 445 654 862 893 953 778 815 909 899 878 873 935 860 824 894 836 874 876 ]
T [ 831 831 789 833 831 891 777 904 841 802 913 719 775 832 804 814 934 756 1569 1163 936 54 421 804 1433 139 1962 310 1144 1 59 611 458 746 1090 880 884 836 872 980 821 780 845 862 885 952 776 790 803 780 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.01 0.00 -0.01 -0.06 0.02 0.02 0.05 0.02 0.04 0.01 0.01 -0.03 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.08 -0.02 -0.03 -0.04 -0.01 -0.02 0.00 -0.03 -0.02 0.02 0.02 -0.00 0.01 ]
G [ 0.01 -0.00 0.02 0.02 -0.02 -0.03 -0.00 -0.02 -0.02 -0.04 -0.02 -0.02 0.09 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.01 0.01 -0.00 -0.03 0.01 0.01 0.04 0.02 0.04 0.02 0.02 -0.07 -0.01 0.00 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1769

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 701

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 33

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages