Detailed information of deep learning profile BP000791.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000791.1
Cell line/tissue: HCT116
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BSC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.00 0.00 0.01 0.03 0.00 0.04 0.01 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 514 528 549 510 729 619 570 577 553 544 673 593 521 590 587 767 481 229 408 20 1 733 155 1479 146 914 457 262 39 595 851 1154 541 684 620 523 525 532 527 629 548 598 645 511 617 523 572 569 550 608 ]
C [ 568 527 575 541 492 617 555 578 572 564 528 507 514 635 620 507 467 224 390 2213 2127 112 39 33 55 91 36 0 10 590 741 216 389 365 452 541 534 454 470 429 463 488 440 529 498 537 485 513 591 480 ]
G [ 573 608 564 534 460 480 505 579 514 500 510 610 651 468 448 400 187 498 659 9 0 40 57 110 9 76 86 1992 2161 563 298 428 443 694 665 547 590 578 697 610 549 556 617 611 521 551 603 544 527 517 ]
T [ 599 591 566 669 573 538 624 520 615 646 543 544 568 561 599 580 1119 1303 797 12 126 1369 2003 632 2044 1173 1675 0 44 506 364 456 881 511 517 643 605 690 560 586 694 612 552 603 618 643 594 628 586 649 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.00 -0.01 -0.05 0.02 0.02 0.04 0.01 0.04 0.02 0.02 -0.02 -0.00 0.01 0.02 -0.00 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.08 -0.02 -0.03 -0.04 -0.01 -0.03 -0.01 -0.02 -0.02 0.02 0.02 -0.01 0.01 ]
G [ 0.00 -0.01 0.01 0.02 -0.02 -0.02 -0.01 -0.02 -0.01 -0.04 -0.03 -0.02 0.07 0.07 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.01 0.01 0.01 -0.02 0.01 0.02 0.04 0.01 0.05 0.02 0.02 -0.05 -0.01 0.00 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 91

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 75

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages