Detailed information of deep learning profile BP000787.1

  1. Home
  2. Deep Learning Profile > BP000787.1
This page shows detailed deep learning-derived predictions and motifs for SRF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000787.1
Cell line/tissue: H1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BIV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.07 0.00 0.04 0.01 -0.00 -0.00 -0.01 0.00 0.01 -0.01 ]
C [ 0.00 0.00 0.00 0.00 0.18 0.16 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.14 0.18 0.01 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 -0.00 -0.00 -0.00 0.02 0.08 0.00 0.08 0.02 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 919 688 801 801 787 1276 1191 854 810 730 719 1161 911 935 1186 934 1071 546 294 1021 17 1 772 299 2707 215 1933 829 225 14 882 1139 1970 870 1441 1062 1035 937 753 718 899 754 929 846 759 1053 940 880 756 898 ]
C [ 938 977 812 865 1032 733 838 1112 1041 940 1099 874 718 572 856 1081 773 619 462 462 3486 3490 327 36 50 71 27 47 9 1 663 1590 251 497 457 528 698 752 715 816 654 708 805 753 872 849 800 789 931 889 ]
G [ 794 827 1070 1096 914 693 784 758 956 622 880 686 1241 1170 629 467 956 238 820 940 8 4 49 35 189 10 52 79 3274 3501 1042 400 542 731 1049 1097 901 1014 1023 1142 1142 977 833 1127 1057 788 929 909 986 964 ]
T [ 872 1031 840 761 790 821 710 799 716 1231 825 802 653 846 852 1041 723 2120 1947 1100 12 28 2375 3153 577 3227 1511 2568 15 7 936 394 760 1425 576 836 889 820 1032 847 828 1084 956 797 835 833 854 945 850 772 ]

Hypothetical CWM

   
A [ 0.00 -0.01 0.02 0.00 -0.01 0.01 -0.03 -0.11 0.05 0.06 0.09 0.03 0.09 0.05 0.02 -0.04 -0.00 0.02 0.02 -0.00 0.01 -0.00 ]
C [ 0.02 0.04 0.03 0.04 0.03 0.03 0.18 0.17 -0.02 -0.05 -0.05 -0.00 -0.05 -0.02 -0.01 -0.05 0.04 0.05 -0.00 0.02 0.03 0.03 ]
G [ 0.03 0.02 0.02 0.00 0.05 0.05 -0.05 -0.02 -0.02 -0.05 -0.00 -0.06 -0.05 -0.03 0.15 0.18 0.04 0.02 0.05 0.03 0.04 0.02 ]
T [ 0.00 0.01 -0.00 0.03 0.02 0.01 -0.03 0.02 0.03 0.08 0.03 0.09 0.05 0.04 -0.10 -0.04 0.01 -0.01 0.00 0.02 -0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 221

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 67

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages