Detailed information of deep learning profile BP000795.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000795.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR504HOI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 0.04 0.00 0.04 0.01 0.00 -0.00 0.00 0.00 0.01 -0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.06 0.05 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 311 304 307 285 268 259 276 317 310 245 290 375 266 291 282 211 461 410 179 428 17 11 977 469 1235 249 1171 809 19 7 373 602 767 227 336 274 271 242 278 273 474 258 323 266 295 319 273 272 399 289 ]
C [ 271 285 287 317 277 490 449 290 422 478 485 415 346 299 338 339 241 182 190 302 1240 1156 30 14 4 82 16 31 3 5 276 382 123 348 192 208 468 499 230 240 234 384 237 260 248 292 451 439 259 262 ]
G [ 398 407 390 269 281 274 255 249 239 241 271 230 279 262 221 176 193 138 549 251 6 6 18 27 16 226 7 180 1251 1247 218 164 199 264 330 307 267 257 322 503 315 327 419 287 263 419 288 285 349 329 ]
T [ 295 279 291 404 449 252 295 419 304 311 229 255 384 423 434 549 380 545 357 294 12 102 250 765 20 718 81 255 2 16 408 127 186 436 417 486 269 277 445 259 252 306 296 462 469 245 263 279 268 395 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.00 0.01 -0.01 -0.04 0.03 0.02 0.04 0.00 0.04 0.02 0.01 -0.02 0.01 0.01 0.01 -0.01 ]
C [ 0.00 0.00 -0.00 0.01 0.06 0.06 -0.03 -0.04 -0.02 -0.01 -0.04 -0.01 -0.03 -0.02 0.00 0.01 -0.01 0.01 ]
G [ 0.00 -0.01 0.01 0.00 -0.02 -0.03 -0.02 -0.04 -0.02 -0.02 -0.04 -0.03 0.07 0.07 0.01 -0.00 0.01 -0.00 ]
T [ -0.00 0.01 0.00 0.00 -0.02 0.01 0.02 0.04 -0.00 0.04 0.02 0.02 -0.04 -0.01 0.00 -0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 86

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages