Detailed information of deep learning profile BP000727.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000727.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR578KEN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 0.00 0.01 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.12 0.00 0.09 0.00 -0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 -0.00 0.00 0.06 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 0.00 0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3814 3152 2923 3266 4585 3958 2932 2960 3210 2991 2874 3700 4399 4373 4365 3106 3103 4137 4951 3094 550 19 16044 50 5229 219 28 4456 1399 1854 5183 3515 3985 3011 2954 3234 4158 4351 3774 3092 3488 4482 5105 4108 3637 3986 3660 3774 3627 3452 ]
C [ 3956 4892 4693 4821 4174 3788 3619 3381 3382 4757 5528 5002 4021 3759 4509 4933 4544 3308 1967 845 1734 16088 66 14754 672 181 31 2797 6740 7622 4544 4979 4170 5116 5499 4245 3687 3762 4628 5140 4852 4540 3809 3935 4485 3869 3939 4008 3962 4102 ]
G [ 4165 4051 3927 4342 4117 3817 3772 5606 6852 5257 3964 3883 4785 5148 4224 4478 4052 5129 6918 12039 996 30 18 556 10177 196 16042 6993 3364 3814 3438 3902 4624 4571 4011 4185 4963 5086 4602 4278 4392 4057 4222 4297 4767 5113 5095 4679 5126 4944 ]
T [ 4210 4050 4602 3716 3269 4582 5822 4198 2701 3140 3779 3560 2940 2865 3047 3628 4446 3571 2309 167 12865 8 17 785 67 15549 44 1899 4642 2855 2980 3749 3366 3447 3681 4481 3337 2946 3141 3635 3413 3066 3009 3805 3256 3177 3451 3684 3430 3647 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.01 0.00 0.03 -0.01 -0.02 0.10 -0.08 0.03 -0.02 -0.05 0.04 -0.02 0.00 0.00 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.03 0.00 0.02 0.12 -0.02 0.10 -0.01 0.00 -0.03 0.01 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.06 0.00 -0.03 -0.00 0.01 0.10 -0.02 0.12 0.02 0.01 0.03 0.01 0.02 0.01 ]
T [ 0.01 0.01 0.01 0.00 -0.04 0.05 -0.05 -0.03 0.02 -0.08 0.08 -0.02 -0.01 0.02 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 80

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages