Detailed information of deep learning profile BP000726.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000726.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR563FBT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.06 -0.00 0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 -0.00 0.05 0.00 0.00 0.00 -0.00 0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.07 -0.00 0.09 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2490 2756 2452 2406 2563 2656 2358 2230 2543 3226 2776 2556 2512 2707 2364 2132 3751 1541 47 10634 44 891 24 3 8857 178 1684 2569 3339 2649 2292 2196 2138 2533 2718 2459 2151 2991 3775 3255 2340 2587 3171 2971 2966 2647 2539 2572 2897 2720 ]
C [ 3237 2913 3026 2869 3016 2957 3290 3500 3477 3053 2811 3181 3313 3014 2647 2632 2436 4584 11524 305 7213 617 52 17 918 8649 4847 3907 2884 3086 3101 3785 3388 2915 2872 3560 4441 3870 2888 2790 3089 3207 2955 2885 2990 2885 2928 3156 2951 3113 ]
G [ 3253 3105 2846 3210 3486 3675 3273 2897 2773 3037 3833 3577 3093 3526 3146 5109 4304 2178 25 348 777 10091 32 11583 1344 685 1479 2366 3156 3501 3231 2868 2972 3545 3813 3393 2598 2491 2739 2792 3033 3399 3244 3384 2961 3352 3272 3143 3167 3215 ]
T [ 2635 2841 3291 3130 2550 2327 2694 2988 2822 2299 2195 2301 2697 2368 3458 1742 1124 3312 19 328 3581 16 11507 12 496 2103 3605 2773 2236 2379 2991 2766 3117 2622 2212 2203 2425 2263 2213 2778 3153 2422 2245 2375 2698 2731 2876 2744 2600 2567 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.01 -0.01 -0.02 0.06 -0.07 0.01 -0.03 -0.04 0.04 -0.03 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 0.01 0.09 -0.02 0.08 -0.01 -0.00 -0.04 -0.00 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.00 -0.04 0.00 -0.02 0.07 -0.02 0.09 0.01 -0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 -0.00 -0.00 -0.02 0.02 -0.04 -0.03 0.02 -0.07 0.07 -0.02 -0.02 0.02 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 63

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages