Detailed information of deep learning profile BP000724.1

  1. Home
  2. Deep Learning Profile > BP000724.1
This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000724.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR359NFW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 0.09 -0.00 0.00 0.00 0.00 0.06 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.13 -0.00 0.07 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.10 -0.00 0.13 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.01 0.00 0.11 0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2592 2904 2474 2485 2631 2815 2487 2395 2604 3427 2900 2853 2756 2949 2790 2909 3377 1581 25 11402 64 812 42 22 10272 114 1972 3194 3404 2915 2450 2421 2394 2771 2962 2526 2243 3188 3993 3530 2560 2837 3359 3081 3197 2809 2755 2726 3114 2942 ]
C [ 3356 3049 3057 2923 3082 3020 3196 3521 3435 2981 2787 3075 3210 2865 2437 1916 1852 4500 11882 153 7638 226 9 37 334 7711 5104 3393 2888 3031 2957 3558 3309 2760 2789 3574 4515 3751 2911 2761 3005 3100 2803 2844 2972 2837 2846 3143 2897 2987 ]
G [ 3153 2883 2733 3152 3489 3606 3393 2745 2719 3098 3841 3545 3050 3506 3097 5041 6002 1654 30 118 371 10901 20 11880 1034 613 1351 2171 3288 3526 3288 2753 2907 3535 3853 3449 2548 2523 2695 2667 3033 3397 3390 3384 2912 3410 3204 3115 3100 3363 ]
T [ 2854 3119 3691 3395 2753 2514 2879 3294 3197 2449 2427 2482 2939 2635 3631 2089 724 4220 18 282 3882 16 11884 16 315 3517 3528 3197 2375 2483 3260 3223 3345 2889 2351 2406 2649 2493 2356 2997 3357 2621 2403 2646 2874 2899 3150 2971 2844 2663 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 0.00 0.03 -0.01 -0.04 0.09 -0.08 0.03 -0.03 -0.04 0.06 -0.04 0.00 0.01 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.02 0.00 0.01 0.13 -0.03 0.11 -0.02 -0.01 -0.03 -0.01 0.06 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 -0.01 -0.03 -0.01 -0.03 0.10 -0.03 0.13 0.01 -0.01 0.01 0.01 0.02 0.01 ]
T [ 0.01 0.01 0.00 0.00 -0.03 0.05 -0.04 -0.02 0.04 -0.08 0.11 -0.04 -0.01 0.04 0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2904

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 485

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 330

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 36

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages