Detailed information of deep learning profile BP000720.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000720.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000EEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.12 -0.00 0.07 0.00 -0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.09 -0.00 0.12 -0.00 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.09 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1519 1621 1449 1469 1566 1623 1506 1399 1551 1862 1671 1536 1578 1613 1437 1248 2601 766 15 6909 10 324 4 0 5781 80 1104 1616 1738 1536 1458 1312 1357 1642 1667 1481 1310 1722 2137 1853 1475 1628 1840 1733 1734 1567 1461 1496 1732 1577 ]
C [ 1924 1835 1898 1796 1871 1864 2027 2126 2146 1897 1735 2070 1940 1858 1605 1706 1307 2655 7042 42 5089 261 5 5 410 5533 3085 2163 1806 1940 1899 2165 2032 1752 1825 2263 2651 2255 1891 1737 1886 1972 1831 1877 1898 1790 1900 1953 1864 1905 ]
G [ 2098 1893 1747 1993 2077 2151 2005 1725 1699 1843 2232 2083 1879 2068 1958 3118 2619 1118 4 54 318 6471 5 7054 653 358 828 1415 2061 2143 1962 1822 1838 2131 2218 1950 1595 1610 1631 1737 1880 2012 1979 1942 1787 2087 1921 1919 1836 1973 ]
T [ 1521 1713 1968 1804 1548 1424 1524 1812 1666 1460 1424 1373 1665 1523 2062 990 535 2523 1 57 1645 6 7048 3 218 1091 2045 1868 1457 1443 1743 1763 1835 1537 1352 1368 1506 1475 1403 1735 1821 1450 1412 1510 1643 1618 1780 1694 1630 1607 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.01 -0.00 0.02 -0.01 -0.02 0.08 -0.09 0.02 -0.04 -0.05 0.04 -0.03 0.00 0.00 0.01 0.01 ]
C [ 0.01 0.01 0.01 0.02 -0.00 0.01 0.12 -0.03 0.10 -0.02 -0.00 -0.06 0.00 0.05 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 0.00 -0.06 0.00 -0.02 0.10 -0.03 0.12 0.01 -0.01 0.02 0.01 0.01 0.01 ]
T [ 0.01 0.01 0.00 0.00 -0.02 0.03 -0.04 -0.03 0.03 -0.09 0.09 -0.02 -0.01 0.02 0.00 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 39

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages