Detailed information of deep learning profile BP000720.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000720.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000EEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.09 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.12 -0.00 0.09 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.12 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 1607 1630 1694 1780 1618 1643 1510 1412 1450 1821 1735 1403 1475 1506 1368 1352 1537 1835 1763 1743 1443 1457 1868 2045 1091 218 3 7048 6 1645 57 1 2523 535 990 2062 1523 1665 1373 1424 1460 1666 1812 1524 1424 1548 1804 1968 1713 1521 ]
C [ 1973 1836 1919 1921 2087 1787 1942 1979 2012 1880 1737 1631 1610 1595 1950 2218 2131 1838 1822 1962 2143 2061 1415 828 358 653 7054 5 6471 318 54 4 1118 2619 3118 1958 2068 1879 2083 2232 1843 1699 1725 2005 2151 2077 1993 1747 1893 2098 ]
G [ 1905 1864 1953 1900 1790 1898 1877 1831 1972 1886 1737 1891 2255 2651 2263 1825 1752 2032 2165 1899 1940 1806 2163 3085 5533 410 5 5 261 5089 42 7042 2655 1307 1706 1605 1858 1940 2070 1735 1897 2146 2126 2027 1864 1871 1796 1898 1835 1924 ]
T [ 1577 1732 1496 1461 1567 1734 1733 1840 1628 1475 1853 2137 1722 1310 1481 1667 1642 1357 1312 1458 1536 1738 1616 1104 80 5781 0 4 324 10 6909 15 766 2601 1248 1437 1613 1578 1536 1671 1862 1551 1399 1506 1623 1566 1469 1449 1621 1519 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.01 0.00 0.02 -0.01 -0.02 0.09 -0.09 0.03 -0.03 -0.04 0.03 -0.02 0.00 0.00 0.01 0.01 ]
C [ 0.01 0.01 0.01 0.02 -0.01 0.01 0.12 -0.03 0.10 -0.02 0.00 -0.06 0.00 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 0.00 -0.06 -0.00 -0.02 0.10 -0.03 0.12 0.01 -0.00 0.02 0.01 0.01 0.01 ]
T [ 0.01 0.01 0.00 0.00 -0.03 0.04 -0.05 -0.04 0.02 -0.09 0.08 -0.02 -0.01 0.02 -0.00 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 39

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages