Detailed information of deep learning profile BP000717.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000717.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000DZU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.14 0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.18 -0.00 0.15 -0.00 0.00 -0.00 -0.00 0.02 0.01 0.00 ]
G [ -0.00 0.00 0.00 0.00 0.05 -0.00 0.00 0.00 -0.00 0.11 -0.00 0.18 0.00 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 -0.00 0.00 -0.00 0.12 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1004 1053 997 1034 964 925 941 1136 1024 926 914 986 900 922 971 1054 973 1036 910 872 1109 1296 904 198 3 4634 6 1253 119 8 1169 483 613 1171 895 1037 878 951 881 1060 1086 957 928 979 1102 1112 1064 999 935 974 ]
C [ 1348 1421 1417 1262 1338 1360 1402 1323 1239 1177 1213 1232 1394 1437 1456 1330 1353 1357 1468 1401 1181 758 333 724 4649 15 4354 174 117 15 841 1689 2005 1365 1381 1247 1347 1463 1276 1213 1210 1369 1442 1436 1352 1305 1311 1334 1344 1273 ]
G [ 1349 1255 1339 1299 1323 1316 1376 1275 1323 1345 1539 1630 1491 1308 1250 1455 1531 1368 1308 1401 1457 1937 3367 347 15 16 118 3223 84 4631 2049 1282 1285 1276 1462 1396 1445 1205 1413 1463 1439 1423 1278 1333 1240 1298 1267 1377 1430 1433 ]
T [ 973 945 921 1079 1049 1073 955 940 1088 1226 1008 826 889 1007 997 835 817 913 988 1000 927 683 70 3405 7 9 196 24 4354 20 615 1220 771 862 936 994 1004 1055 1104 938 939 925 1026 926 980 959 1032 964 965 994 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.01 -0.00 0.03 -0.03 -0.05 0.14 -0.14 0.04 -0.05 -0.06 0.06 -0.04 -0.00 0.00 0.01 0.01 ]
C [ 0.01 0.03 0.02 0.04 -0.01 0.02 0.18 -0.05 0.15 -0.05 0.03 -0.09 0.01 0.06 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.08 0.00 -0.08 0.02 -0.04 0.15 -0.06 0.18 0.02 0.01 0.04 0.02 0.02 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.05 0.08 -0.06 -0.06 0.03 -0.14 0.12 -0.05 -0.02 0.02 -0.01 0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 122

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages