Detailed information of deep learning profile BP000716.1

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This page shows detailed deep learning-derived predictions and motifs for ATF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF2
Model ID: BP000716.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: Jun-related
JASPAR ID: MA1632.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15336  
Source: ENCSR961PPA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.05 -0.00 -0.00 0.12 -0.00 0.00 -0.00 0.01 0.10 -0.00 -0.00 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.08 -0.00 0.00 0.01 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.10 -0.00 -0.00 0.14 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.10 0.00 -0.00 0.01 0.00 0.12 -0.00 -0.00 0.06 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5279 5577 5626 5716 5608 5572 5584 5414 5612 5514 5343 5628 5602 6038 6392 6721 6555 6800 5583 6403 13809 90 44 17950 156 21 78 3719 17664 211 3414 6151 5429 5082 5683 5600 5468 5441 5822 5633 5672 5433 5610 5479 5835 5470 5323 5519 5535 5648 ]
C [ 3359 3499 3468 3224 3285 3197 3272 3113 3282 3592 3396 3345 3557 3221 2660 2661 2652 2691 3233 2082 585 115 39 22 4721 33 65 14044 35 2402 6057 3290 3289 3169 2876 3202 3459 3412 3219 3371 3160 3378 3503 3566 3277 3564 3556 3326 3309 3307 ]
G [ 3587 3597 3470 3700 3724 3521 3523 3509 3559 3319 3408 3541 3518 3528 3190 2914 3451 3440 3294 6419 3519 39 17040 51 1299 18038 5 205 214 751 2980 3199 2752 2647 2866 2660 3470 3637 3390 3738 3771 3686 3344 3560 3338 3508 3380 3348 3545 3662 ]
T [ 5874 5426 5535 5459 5482 5809 5720 6063 5646 5674 5952 5585 5422 5312 5857 5803 5441 5168 5989 3195 186 17855 976 76 11923 7 17951 131 186 14735 5648 5459 6629 7201 6674 6637 5702 5609 5668 5357 5496 5602 5642 5494 5649 5557 5840 5906 5710 5482 ]

Hypothetical CWM

   
A [ 0.02 0.01 0.00 0.01 0.07 -0.06 -0.05 0.12 -0.09 0.02 -0.03 0.05 0.10 -0.06 0.00 0.01 0.01 0.01 ]
C [ -0.00 -0.00 0.01 -0.01 -0.02 0.02 -0.05 -0.09 0.15 -0.02 -0.02 0.10 -0.06 0.03 0.04 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.03 -0.06 0.11 -0.02 -0.03 0.14 -0.10 -0.05 0.02 -0.02 -0.00 0.02 -0.00 -0.00 ]
T [ 0.00 0.01 0.01 -0.00 -0.06 0.10 0.04 -0.04 0.02 -0.08 0.12 -0.06 -0.06 0.07 0.01 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 67

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 48

CWM

PFM

     

HCWM

7 profiles found for the same TF (ATF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000709.1 ATF2 ENCSR000BQK GM12878 Homo sapiens MA1632.2
BP000710.1 ATF2 ENCSR000BQU H1 Homo sapiens MA1632.2
BP000711.1 ATF2 ENCSR014ARU K562 Homo sapiens MA1632.2
BP000712.1 ATF2 ENCSR047BUZ HepG2 Homo sapiens MA1632.2
BP000713.1 ATF2 ENCSR217HTK HEK293 Homo sapiens MA1632.2
BP000714.1 ATF2 ENCSR869IUD K562 Homo sapiens MA1632.2
BP000715.1 ATF2 ENCSR908HWZ HepG2 Homo sapiens MA1632.2
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