Detailed information of deep learning profile BP000676.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000676.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR000BRS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.00 0.01 -0.00 0.00 -0.00 0.00 0.03 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.00 0.03 0.04 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1742 2035 1839 1926 1947 1881 2008 2021 1796 1748 1901 1893 1899 1828 1776 1712 1923 2032 1986 1647 1746 1287 1193 3315 2980 5307 29 32 12 13 7110 2326 2218 2418 1545 1568 1448 1701 1976 2085 1629 2089 1930 1773 1902 1694 1804 1705 1883 1829 ]
C [ 1706 1701 1612 1688 1865 1735 1648 1622 1692 1761 1727 1766 1850 1777 1786 1695 1421 1381 1485 1796 1936 2373 3088 1370 543 61 1 6 81 6835 8 1684 1641 1348 1658 1908 1909 1940 1588 1632 1900 1803 2097 1998 1862 1689 1885 1939 1678 1753 ]
G [ 2257 1866 2130 2063 1806 2021 2053 2084 2285 2151 1839 2161 2136 2159 2049 2308 2387 2509 2298 2408 2415 1772 1337 1019 3390 1816 7286 7268 73 42 173 2382 2558 2305 2670 2177 1916 1981 2207 2061 1983 1884 1743 1875 1956 2277 1948 1895 1881 2169 ]
T [ 1648 1751 1772 1676 1735 1716 1644 1626 1580 1693 1886 1533 1468 1589 1742 1638 1622 1431 1584 1502 1256 1921 1735 1649 440 169 37 47 7187 463 62 961 936 1282 1480 1700 2080 1731 1582 1575 1841 1577 1583 1707 1633 1693 1716 1814 1911 1602 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 0.01 0.01 0.02 -0.02 -0.01 -0.03 -0.03 0.03 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 -0.00 -0.01 -0.01 -0.03 -0.00 0.03 -0.02 0.01 0.01 0.00 0.00 ]
G [ 0.01 0.00 0.00 -0.00 0.01 0.01 0.03 0.04 -0.01 -0.01 0.01 -0.00 0.00 0.01 0.01 ]
T [ -0.00 0.00 0.00 -0.00 -0.01 -0.02 -0.01 -0.01 0.04 0.01 -0.02 -0.00 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 13689

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2006

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 709

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 21

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000679.1 NR2F2 ENCSR168SMX liver Homo sapiens MA1111.2
BP000680.1 NR2F2 ENCSR338MMB liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
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