Detailed information of deep learning profile BP000680.1

  1. Home
  2. Deep Learning Profile > BP000680.1
This page shows detailed deep learning-derived predictions and motifs for NR2F2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000680.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR338MMB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.01 0.02 0.00 -0.00 -0.00 0.00 0.04 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 0.05 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 0.04 0.04 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2527 2510 2524 2596 2433 2513 2425 2485 2434 2543 2539 2585 2368 2464 2525 2521 2423 2317 2657 2459 2033 2032 4085 4180 6262 23 4 3 0 9284 2747 2761 2190 2549 2039 1936 2211 2162 2396 2453 2487 2443 2357 2329 2384 2433 2290 2325 2463 2427 ]
C [ 2182 2155 2187 2221 2235 2136 2233 2210 2244 2199 2267 2149 2342 2352 2213 1954 1858 1966 2216 2500 3110 3605 2216 618 2 1 0 151 9315 25 1827 1586 1586 2465 3093 2833 2109 2139 2095 2230 2361 2468 2446 2413 2246 2122 2238 2307 2312 2307 ]
G [ 2408 2469 2553 2416 2489 2418 2561 2541 2548 2413 2509 2484 2553 2406 2499 2933 3130 3198 2529 2395 2272 1931 1514 3908 3189 9419 9288 121 4 133 3424 3524 4098 2432 2273 2249 2444 2799 2752 2437 2477 2372 2419 2360 2520 2527 2503 2602 2401 2376 ]
T [ 2337 2320 2190 2221 2297 2387 2235 2218 2228 2299 2139 2236 2191 2232 2217 2046 2043 1973 2052 2100 2039 1886 1639 748 1 11 162 9179 135 12 1456 1583 1580 2007 2048 2435 2689 2353 2210 2333 2128 2170 2231 2351 2303 2371 2422 2219 2277 2343 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 0.03 -0.01 -0.01 -0.03 -0.04 0.04 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.04 0.01 0.05 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.00 0.00 0.01 0.02 0.04 0.04 0.00 -0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.04 -0.01 0.01 0.03 0.02 -0.02 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 94

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 85

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 84

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 66

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000676.1 NR2F2 ENCSR000BRS K562 Homo sapiens MA1111.2
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000679.1 NR2F2 ENCSR168SMX liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
  • 1 (current)