Detailed information of deep learning profile BP000679.1

  1. Home
  2. Deep Learning Profile > BP000679.1
This page shows detailed deep learning-derived predictions and motifs for NR2F2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000679.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR168SMX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.00 -0.00 0.00 0.04 0.00 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.05 0.05 -0.00 -0.00 0.00 0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3840 3828 3928 3944 3783 3917 3896 3764 3849 3808 3885 3981 3726 3771 3862 3951 3948 3480 3942 3668 2766 3607 6649 6644 9988 21 17 13 3 14293 4213 4070 3568 3775 3048 3114 3294 3667 3702 3693 3780 3758 3667 3633 3660 3765 3539 3515 3801 3682 ]
C [ 3428 3507 3327 3374 3438 3401 3330 3385 3501 3414 3549 3465 3661 3670 3522 3104 2785 2841 3355 3904 5298 5343 3247 946 9 1 1 402 14341 46 2828 2666 2659 3537 4427 4053 3498 3295 3299 3507 3681 3749 3724 3750 3537 3320 3522 3533 3526 3452 ]
G [ 3719 3804 3931 3882 3916 3780 3948 4027 3863 3803 3913 3869 3910 3773 3913 4420 4874 5497 4341 3712 3499 2886 2325 5960 4571 14539 14293 318 24 208 5334 5466 6003 4088 3936 3717 3821 4146 4237 3871 3829 3709 3777 3718 3858 3910 3791 4027 3747 3857 ]
T [ 3590 3438 3391 3377 3440 3479 3403 3401 3364 3552 3230 3262 3280 3363 3280 3102 2970 2759 2939 3293 3014 2741 2356 1027 9 16 266 13844 209 30 2202 2375 2347 3177 3166 3693 3964 3469 3339 3506 3287 3361 3409 3476 3522 3582 3725 3502 3503 3586 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 0.01 0.01 0.03 -0.02 -0.02 -0.03 -0.05 0.04 0.01 0.00 0.00 -0.00 ]
C [ 0.01 0.02 0.01 0.01 -0.00 -0.01 -0.02 -0.04 0.01 0.06 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.02 0.03 0.05 0.05 0.00 -0.01 0.02 0.01 0.01 0.02 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.04 -0.01 0.01 0.04 0.01 -0.03 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4844

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000676.1 NR2F2 ENCSR000BRS K562 Homo sapiens MA1111.2
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000680.1 NR2F2 ENCSR338MMB liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
  • 1 (current)